BAC Information

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BAC

Clone NameMSMg01-232H08
Chromosome5 (Build37)
Map Location 98,376,902 - 98,377,147
singlet/doubletsinglet
Overlap geneAntxr2
Upstream geneLOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneEG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik, Bmp3, Prkg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232H08.T7 (MSMg01no232_h08.b1)MSMg01-232H08.TJ (MSMg01no232_h08.g1)
ACCAG398960AG398961
length726727
length of high quality
(start - end)
316 (44 - 359)248 (72 - 319)
definitionCHROMAT_FILE: MSMg01no232_h08.b1 PHD_FILE: MSMg01no232_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:57 2005CHROMAT_FILE: MSMg01no232_h08.g1 PHD_FILE: MSMg01no232_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTTTTTTTAAAGCTCTGTACCCTATTTTTAATGGGGTTATTTGAA
TTTCTGGAATTCAGCTTCTTGAGCTCTTTTTATATATTGAATATTAGTCC
CTTATCAGATTTAGGATTGGTAAAAATTCTTTCCCAATCTGTTGCTGGCC
TTTTTGTCTTATTGACAGTATCTTTTGCCCTATAGAAGCTTTGGAATTTT
ATGAGGTCCCATTTGTCAATTCTTGACCTTAAAGCATAGGTCATTGCCGT
TCTGTTTAGGAATTTTTCCCCTGTGCCCATTGAGGCTTTTCCCCACTTTC
TCCACTATTTTATTTATCCCCCCCCCCCCCTATGTGGAGTTCTTTGATCC
ACTTAGATTTGAGACCCCACCGGATAAATTAACATTCTTCTACATGATAA
CTGCCAGTTGTGCCAGCACCATTCGTTGAAAATGCTGTCTTTTTTCCACT
GGACGGTTCTAGCTCCCTTGTCATAGATCAAGTAACCATATGTTGAGTGG
ATTCATTTCTAGGTCTTCAATTCTATTCCACTGATCTACCCGTTCTGTCG
CTGTACCAGTACCATGCAGTTTTTATCACAAATGCCCTGTAGTACAGATT
GTACACAGTCCTGTTTGACTCCCCTATGTTCTTTCTATGCTGAAATAAAA
TCTTGCTATCATAAGTTTCTTGCTAT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTCAAATAGTAAGTAACTGTTAGTTCTT
TTCAAAGTCGAGCACTGTTGCAACTGTAAATGACTGACATTTTTAAAGTT
GATGTTCTAGGGTTTTTTTTTTCCAAAGCAGTGAGGAAACCCATAACTAT
TTTTATCCTTAGCATTCATAAATCTTATCAATGCAGTCCTTTGATTGATG
GAGCCTGCTGTTCTTCACCAGTTCTGGACATGGTTAGGATGTTTCCCCGG
AGAAGCAATGTGCACAGAGAGGACCCAGTGCTGACCAAAGAGGGATGCAA
TTATAAAAATTATGTTGCCCGCCGCCCCGCAGAATCCTACAAATGTATAC
TTTATACCAGTGATTTCCCCCGCTTTAAAAAACCAACCTCCTTCCTTTTA
ATTCCTCCATCACCTCGACCTCTGTATTAGGAAGCGTTTACAGTCGGCCA
TTTCTTGCTGGGCAAAGGATCCTCCTCCTCCTCCTATGTACACACAGCTT
TTTAACAGTGGTTCTTATCACCCCATTATTTAACTGCTCACTCCCACGTG
TCTCGTATTGACACGCCCCACATTACTTCATTGCCCTTTAATACTTTCAA
ATATCATCCTTGGCACCTTTTTCGCGCTTATCATTTCACTCTATTCCCTT
TTATTGTCCCTCCCCGCCCCGCCCGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_h08.g1 MSMg01no232_h08.g1 CHROMAT_FILE:
MSMg01no232_h08.g1 PHD_FILE: MSMg01no232_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:57 2005
         (248 letters)



>mm_chr5_98376702_98377347
          Length = 646

 Score =  422 bits (218), Expect = e-122
 Identities = 240/248 (96%), Gaps = 2/248 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcaaatagtaagtaactgttagttcttttcaaagtcgagcactgttgcaactgtaaat 60
           ||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||||
Sbjct: 201 tctcaaatagtaactaactgttagttcttttcaaagaagagcattgttgcaactgtaaat 260

                                                                       
Query: 61  gactgacatttttaaagttgatgttctagggttttttttttccaaagcagtgaggaaacc 120
           |||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||
Sbjct: 261 gactgacatttttaaagttgatgttccagggtttttttt--ccaaagcagtgaggaaacc 318

                                                                       
Query: 121 cataactatttttatccttagcattcataaatcttatcaatgcagtcctttgattgatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cataactatttttatccttagcattcataaatcttatcaatgcagtcctttgattgatgg 378

                                                                       
Query: 181 agcctgctgttcttcaccagttctggacatggttaggatgtttccccggagaagcaatgt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agcctgctgttcttcaccagctctggacatggttaggatgtttccccggagaagcaatgt 438

                   
Query: 241 gcacagag 248
           ||||||||
Sbjct: 439 gcacagag 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 646
Length adjustment: 9
Effective length of query: 239
Effective length of database: 637
Effective search space:   152243
Effective search space used:   152243
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)