Query= MSMg01no232_j01.b1 MSMg01no232_j01.b1 CHROMAT_FILE:
MSMg01no232_j01.b1 PHD_FILE: MSMg01no232_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:05 2005
(659 letters)
>mm_chr5_30047132_30048190
Length = 1059
Score = 1197 bits (619), Expect = 0.0
Identities = 649/663 (97%), Gaps = 8/663 (1%)
Strand = Plus / Plus
Query: 5 gaattcgtgttcccaggccacaatcagtaattatttgactctagaataaactatcccctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattcgtgttcccaggccacaatcagtaattatttgactctagaataaactatcccctt 256
Query: 65 gaggggacaaatataaccctctccattttcctatagagtcagcctcctcccagagcagga 124
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gaggggacaaagaaaaccctctccattttcctatagagtcagcctcctcccagagcagga 316
Query: 125 gatgagggagggagtgtgccctaaggaatggtcacattcttcctgtccttgaagcctcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gatgagggagggagtgtgccctaaggaatggtcacattcttcctgtccttgaagcctcag 376
Query: 185 attgctcctgttttgagtgagacaaaacaaaaagcatatttatttattta------t--t 236
||||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct: 377 attgctcctgttttgagtgagacaaaacataaagcatatttatttatttacttacttact 436
Query: 237 tatttacttacttacttacttatttgtggtgtgtgtgtgtggtatgtgtgaatacctttg 296
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tacttacttacttacttacttatttgtggtgtgtgtgtgtggtatgtgtgaatacctttg 496
Query: 297 taagtgagtctgcaggtcagaggataactttttggggttggctctatacttcctgggtgt 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 497 taagtgagtctgcaggtcagaggataactttttggggttggttctatacttcctgggtgt 556
Query: 357 gatccagggattgagctcagattctcagcttcaagtgcttttacttttatacaagcaaat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gatccagggattgagctcagattctcagcttcaagtgcttttacttttatacaagcaaat 616
Query: 417 ctgccttcttttttcatccattggccctttcacagttgggagtgttgctgccactacccc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctgccttcttttttcatccattggccctttcacagttgggagtgttgctgccactacccc 676
Query: 477 caaaacaacgctcttggagcacacctgagctgatctgggcaggtcagaaactcaccctgc 536
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 caaaacaaagctcttggagcacacctgagctgatctgggcaggtcagaaactcaccctgc 736
Query: 537 tgtgcaaagatctgcatcatcataaattggtgttcttgccaggagatttaattaccctgc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgtgcaaagatctgcatcatcataaattggtgttcttgccaggagatttaattaccctgc 796
Query: 597 atcttctatctgcatgacaagacacccttcattcacctcttaattcctttttgcctgctt 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atcttctatctgcatgacaagacacccttcattcacctcttaattcctttttgcctgctt 856
Query: 657 ctc 659
|||
Sbjct: 857 ctc 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_j01.g1 MSMg01no232_j01.g1 CHROMAT_FILE:
MSMg01no232_j01.g1 PHD_FILE: MSMg01no232_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:05 2005
(295 letters)
>mm_chr5_30201738_30202432
Length = 695
Score = 543 bits (281), Expect = e-159
Identities = 290/293 (98%)
Strand = Plus / Minus
Query: 1 tctccagaccattgtctgactcactccttcctgtccatcaggcttcagtccgtgtgtctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tctccagaccattgtctgactcactccttcctgtccatcaggcttcagtccgtgtgtctc 434
Query: 61 cttaaccagctcttctccattcatccaatctgaaacatctctgctgtggatctttgtctc 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 433 cttaaccagctcttctccattcacccaatctgaaacatctctgctgtggatctttgtctc 374
Query: 121 atgactttcattttcttatagcccatggcccatcctgagatgtcttgcctagtttagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atgactttcattttcttatagcccatggcccatcctgagatgtcttgcctagtttagaga 314
Query: 181 aactgcatcactgcttgaattgttttctgcctgcacagacaggctaaggagaaaatgtcc 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aactgcatcattgcttgaattgttttctgcctgcacagacaggctaaggagaaaatgtcc 254
Query: 241 ctcaaggagagataataagttacaaagcagtatttggcatggtccttgtgata 293
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atcaaggagagataataagttacaaagcagtatttggcatggtccttgtgata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space: 196196
Effective search space used: 196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
