BAC Information

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BAC

Clone NameMSMg01-232P14
Chromosome5 (Build37)
Map Location 89,100,078 - 89,100,404
singlet/doubletsinglet
Overlap geneGrsf1
Upstream geneCsn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3
Downstream geneMobkl1a, Dck, Mkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2, LOC631105
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232P14.T7 (MSMg01no232_p14.b1)MSMg01-232P14.TJ (MSMg01no232_p14.g1)
ACCAG399318AG399319
length735738
length of high quality
(start - end)
315 (42 - 356)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no232_p14.b1 PHD_FILE: MSMg01no232_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:35 2005CHROMAT_FILE: MSMg01no232_p14.g1 PHD_FILE: MSMg01no232_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGTAGCAGTGTATTTATCTTTGTGTGTGTGTGTGTGTGCTTTCCTTTG
TAGTGTATGAAATAAACAACGAAGATGTGGATGCCTTAATGTAGAGCCTG
CAGGTCAAGCCTTCGCCTGTGCTCAGTGATGGTGTGGTCCGCCTGAGAGG
ACTTCCTTACAGCTGCAATGAAAAGGACATTGTGGACTTCTTTGCAGGTA
GGTGACAGTGACGTCGTGTTTGGACGTTTCTTCCTATCATTATTCTTCCT
TTTGTGCCTTTGAAGTGTTTCAGTCTTTGAGGCAGATCCTTCGGAATGTC
AGCTTTCTGATTTTGCCCCCCGCCCCCAAACTGTTTCTCCAAGACAGTAA
TCATTTACATGACCCCAAACCGAAAGAAATGGGGATGTAGCTCAGTTGGT
GGAATGCTTGTTTATCATTCACAAAGCCCTGTATTAGATCCCAGTACCAC
ATAAACTGTGTGGCAGTTCACACCTATAATCCCAGCACCGGGGGTGGGGT
AGGGGATATGAGTGTCATTTACTTTTCCTCCCCCAATTTTTTTCTCTTTT
ATCCCAATTCCCTTCTCTCTTCCTTTTTCTCTTTTATCCCACTTTTAGAA
TTATTTTTACCTTTTCCCTTTTTGCTTAACCTTTTTTACTCCATTTCTTC
TATTTTCAACACTTCTTTTTTCTTCTTTACTTTTG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCTG
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTTTTGTTTTTTATACCCCCCCCCATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTACCCCCATAGCAAACTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTTAGTGA
GGTAACACATTCACTAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTA
TACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_p14.b1 MSMg01no232_p14.b1 CHROMAT_FILE:
MSMg01no232_p14.b1 PHD_FILE: MSMg01no232_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:35 2005
         (315 letters)



>mm_chr5_89099847_89100561
          Length = 715

 Score =  551 bits (285), Expect = e-161
 Identities = 309/327 (94%), Gaps = 16/327 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagtagcagtgtatttatctt----------------tgtgtgtgtgtgtgtgt 48
           |||||||||||||||||||||||||||                |||||||||||||||||
Sbjct: 558 gaattcaagtagcagtgtatttatctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 499

                                                                       
Query: 49  gctttcctttgtagtgtatgaaataaacaacgaagatgtggatgccttaatgtagagcct 108
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 498 gctttcctttgtagtgtatgaaataaacaacgaagatgtggatgccttaatgaagagcct 439

                                                                       
Query: 109 gcaggtcaagccttcgcctgtgctcagtgatggtgtggtccgcctgagaggacttcctta 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcaggtcaagccttcgcctgtgctcagtgatggtgtggtccgcctgagaggacttcctta 379

                                                                       
Query: 169 cagctgcaatgaaaaggacattgtggacttctttgcaggtaggtgacagtgacgtcgtgt 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cagctgcaatgaaaaggacattgtggacttctttgcaggtaggtgacagtgacgtcgtgt 319

                                                                       
Query: 229 ttggacgtttcttcctatcattattcttccttttgtgcctttgaagtgtttcagtctttg 288
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttggacgtttcttcctatcatcattcttccttttgtgcctttgaagtgtttcagtctttg 259

                                      
Query: 289 aggcagatccttcggaatgtcagcttt 315
           |||||||||||||||||||||||||||
Sbjct: 258 aggcagatccttcggaatgtcagcttt 232


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)