Query= MSMg01no233_c01.b1 MSMg01no233_c01.b1 CHROMAT_FILE:
MSMg01no233_c01.b1 PHD_FILE: MSMg01no233_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:47 2005
(450 letters)
>mm_chr5_18682861_18683711
Length = 851
Score = 737 bits (381), Expect = 0.0
Identities = 429/445 (96%), Gaps = 5/445 (1%)
Strand = Plus / Minus
Query: 5 gaattcactcta-ttttttcaaaatagtttcacacatagtcaaacaacacaatcagtaga 63
|||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 647 gaattcactctatttttttcaaaatagtttcacacatagtgaaacaacacagtcagtaga 588
Query: 64 tttgaatgtcattatttgtttaaagaactttatagcttgcaaattttcttgtcaacaaat 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 587 tttgaatgtcattatttgtttaaagaactttatagcttgcaaatttt-ttgtcaacaaat 529
Query: 124 tatcctctttagttttcatatgttcatgtaatgttttggatagtctaatcaatattttaa 183
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 528 tatcctctttagttttcatatgttcatgtaatgttttggatactctaatcaatattttaa 469
Query: 184 actattttattaagtctttcaaaaatatcataattatatttagatcattttaatgccctc 243
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 468 actattttattaagtctttc-aaaatatcataattatatttagatcattttaatgccctc 410
Query: 244 tttcaactcctgccagatccatctcctcatctgtacccacccaagtttgtgtccttgcat 303
||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct: 409 tttcaactcctgccagatctatctccccatctgtacccacccaagtttgtgtctttgcat 350
Query: 304 ttttaaaaaatatatgtagtctaattgtactgtcaagatagtcttaggatgattt-tcaa 362
|||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct: 349 ttttaaaaaatatatggagtctaattatactgtcaagatagtcttaggatgctttctcaa 290
Query: 363 tcaccaatgtgggtaggatggtgggaggatcatagtg-atattgattgtagttaaaaggt 421
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 289 tcaccaatgtgggtagaatggtgggaggatcatagtggatattgattgtagttaaaaggt 230
Query: 422 catttaatcatgattgctttatcat 446
|||||| ||||||||||||||||||
Sbjct: 229 catttagtcatgattgctttatcat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 851
Length adjustment: 10
Effective length of query: 440
Effective length of database: 841
Effective search space: 370040
Effective search space used: 370040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_c01.g1 MSMg01no233_c01.g1 CHROMAT_FILE:
MSMg01no233_c01.g1 PHD_FILE: MSMg01no233_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:47 2005
(643 letters)
>mm_chr5_18604988_18606030
Length = 1043
Score = 1220 bits (631), Expect = 0.0
Identities = 637/639 (99%), Gaps = 1/639 (0%)
Strand = Plus / Plus
Query: 1 agttgagttagtgcagtcagtgccatccgtccagtttgtgcagtttacgttcatggaaca 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 202 agttgagttagtgcagtcagtgccatccgtccagtttgtgcagttta-gttcatggaaca 260
Query: 61 gagcagcagattttttccaagcagagcaattaggttagaagtcaagtgaaaccagtttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcagcagattttttccaagcagagcaattaggttagaagtcaagtgaaaccagtttga 320
Query: 121 atgagtcaacttggagcagaattttgagccagaacagctgaattaaaccagcctgtcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgagtcaacttggagcagaattttgagccagaacagctgaattaaaccagcctgtcaga 380
Query: 181 gttcagaaagaactaaagtggggaagcttacaaaggagtaagcctccaagatgataatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcagaaagaactaaagtggggaagcttacaaaggagtaagcctccaagatgataatga 440
Query: 241 aatctggtgaactaagttacattgacatgcaggaattgattatcttcttctatgtgtgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatctggtgaactaagttacattgacatgcaggaattgattatcttcttctatgtgtgat 500
Query: 301 cagaaatagaacttgggtcgtaagattggttcagaccccatttgcttgctgaatcatctc 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 cagaaatagaacttgggtcgtaagattggttcagacaccatttgcttgctgaatcatctc 560
Query: 361 catggattttaccatactaacttaagtaccactttaataaggagaattgaatagttttgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catggattttaccatactaacttaagtaccactttaataaggagaattgaatagttttgc 620
Query: 421 cactaaaatattatagataaaattaataagatttcatgacaaaacttggaaaatagtagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactaaaatattatagataaaattaataagatttcatgacaaaacttggaaaatagtagt 680
Query: 481 ttattttccattattcatcttgaaataatcattgttacctctatttttatcactattcat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttattttccattattcatcttgaaataatcattgttacctctatttttatcactattcat 740
Query: 541 caatgcttaatcaataatttgaaaatttccattcttatattaacccccaagaaacattta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caatgcttaatcaataatttgaaaatttccattcttatattaacccccaagaaacattta 800
Query: 601 tttcatgttgccaatgtatatccagaagatgtcccaacc 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttcatgttgccaatgtatatccagaagatgtcccaacc 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
