BAC Information

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BAC

Clone NameMSMg01-233F02
Chromosome5 (Build37)
Map Location 32,793,374 - 32,951,214
singlet/doubletdoublet
Overlap genePpp1cb, LOC634553, LOC675983, Yes1
Upstream geneXab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743
Downstream geneLOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233F02.T7 (MSMg01no233_f02.b1)MSMg01-233F02.TJ (MSMg01no233_f02.g1)
ACCAG399562AG399563
length719782
length of high quality
(start - end)
414 (44 - 457)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no233_f02.b1 PHD_FILE: MSMg01no233_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:00 2005CHROMAT_FILE: MSMg01no233_f02.g1 PHD_FILE: MSMg01no233_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(32,793,374 - 32,793,783)(32,950,925 - 32,951,214)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGACGTCCTGCCACTCCGCCTCGAACAGCTAATCCACCGAAGAAAA
GGTGAAGACAGGAATTCTAGACCGAGAAACCATCAGATTTGTTAAGGACA
TACTTCATAATATATAAGTGTGCACTGTAAAACCATCCAGCCATTCGACA
CCCTTTATGATGTCACACCTTTAACTTAAGGAGACGGTAAAGGATCTTAA
ATTTTTTTCTAATAGAAAGATGTGCTACACTGTATTGTAATAAGTATACT
CTGTTATAATATTCAACAAAATTAAATCCAAATTCAAAAGTATCCATTAA
AGTTCTATCTTCTCATATCACAGTTTTTAAAGTTGAAAAGCATCCCAGTT
AAACTAGCCCTGTTAGTGACCCAGATGAAAGCATGAAGATCCATCTGTGT
AATGTGGATTTAGTGGTGCTTGGTTGTTTCATTATTTTGAGCTTGTTTTG
TTTTGTTTGTTTTTGCTAGAATAATGGCATCTACTTTTCCTATTTTTCCC
TAAACATTTTTAAAAGTGAAAATGGGAAGAGCTTTAAAGACATTCACCAA
CTATTCTTTTCCTTTACTTATCTACTTAAGTAACTGTTGGATCTTACTAA
GAAAACTTACTCCTCATTACAGTAAAAAGGAACTTTAGAGGTCGATAGGT
TTTAAAAATATACAAACTA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTGCCACGTAAGCTAAAACCCT
ACATTTAACCCCCAGAGACAGTATAAAGGAGGAAGGTGAGACCCAAGTAC
ACCAAGTTGTCTTCTGGCCTCCACATGTGCCCATATACACACTAATAAAT
AAATAAATGTTGAAAAAAGCCAGCCCATGCCAACATGTCACTCACAGCCC
CACCCTCACCCCACATTCTCTTTAAGAAGCCTTTATGAATATGCTTATCA
TGGAAGTTGGGGCCATTTATAAAGTATTTTTGTGACTGCTGTCTTACAAT
ATTATTAAGGTTCATCTTTTATTTTACCCCCCCTCCCGCTTTTTTGTTGT
TGCTACCACATACTTATAAAAGCATAACTTTTTAAAACACTTTATGAACA
AAAAACAAAGGTCTTAACATTCTTAAAGCAAAAAACTTAACAGTGAATAA
TAACAATTCAAAGTTGAATTTTTGAGAGTTGGAGAAATGGTTTAGTGGGC
AAAAGGTCTATGTCTACATGGTTATAAACAGAAAACCTTACTTTCCAAAA
TTTGTCCTCCTGATCCCCCACGTATATTACCATGGCTACACCATGTATCA
TTATATTTTGCTTTTCCCCTTTAAAACTAATGTAATATACTATTTTGCTC
TGCCTTTCTTTCCTTTTCTTATATTAANGTTATAATCAACTTTTTCTTCC
TTTTTTCAAACAGAATGCATTGTTTTTCTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_f02.b1 MSMg01no233_f02.b1 CHROMAT_FILE:
MSMg01no233_f02.b1 PHD_FILE: MSMg01no233_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:00 2005
         (414 letters)



>mm_chr5_32793170_32793983
          Length = 814

 Score =  770 bits (398), Expect = 0.0
 Identities = 407/410 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggacgtcctgccactccgcctcgaacagctaatccaccgaagaaaaggtgaag 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggacgtcctgtcactccgcctcgaacagctaatccaccgaagaaaaggtgaag 264

                                                                       
Query: 65  acaggaattctagaccgagaaaccatcagatttgttaaggacatacttcataatatataa 124
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaggaattctagaaagagaaaccatcagatttgttaaggacatacttcataatatataa 324

                                                                       
Query: 125 gtgtgcactgtaaaaccatccagccattcgacaccctttatgatgtcacacctttaactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtgcactgtaaaaccatccagccattcgacaccctttatgatgtcacacctttaactt 384

                                                                       
Query: 185 aaggagacggtaaaggatcttaaatttttttctaatagaaagatgtgctacactgtattg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggagacggtaaaggatcttaaatttttttctaatagaaagatgtgctacactgtattg 444

                                                                       
Query: 245 taataagtatactctgttataatattcaacaaaattaaatccaaattcaaaagtatccat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taataagtatactctgttataatattcaacaaaattaaatccaaattcaaaagtatccat 504

                                                                       
Query: 305 taaagttctatcttctcatatcacagtttttaaagttgaaaagcatcccagttaaactag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaagttctatcttctcatatcacagtttttaaagttgaaaagcatcccagttaaactag 564

                                                             
Query: 365 ccctgttagtgacccagatgaaagcatgaagatccatctgtgtaatgtgg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccctgttagtgacccagatgaaagcatgaagatccatctgtgtaatgtgg 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no233_f02.g1 MSMg01no233_f02.g1 CHROMAT_FILE:
MSMg01no233_f02.g1 PHD_FILE: MSMg01no233_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:00 2005
         (290 letters)



>mm_chr5_32950621_32951310
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgccacgtaagctaaaaccctacatttaacccccagagacagtataaaggaggaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 acttgccacgtaagctaaaaccctacatttaacccccagagacagtataaaggaggaagg 535

                                                                       
Query: 61  tgagacccaagtacaccaagttgtcttctggcctccacatgtgcccatatacacactaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgagacccaagtacaccaagttgtcttctggcctccacatgtgcccatatacacactaat 475

                                                                       
Query: 121 aaataaataaatgttgaaaaaagccagcccatgccaacatgtcactcacagccccaccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aaataaataaatgttgaaaaaagccagcccatgccaacatgtcactcacagccccaccct 415

                                                                       
Query: 181 caccccacattctctttaagaagcctttatgaatatgcttatcatggaagttggggccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 caccccacattctctttaagaagcctttatgaatatgcttatcatggaagttggggccat 355

                                                             
Query: 241 ttataaagtatttttgtgactgctgtcttacaatattattaaggttcatc 290
           |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 354 ttataaagtatttttgtgactgctgtcttagaatattattaaggttcatc 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)