Query= MSMg01no233_h17.b1 MSMg01no233_h17.b1 CHROMAT_FILE:
MSMg01no233_h17.b1 PHD_FILE: MSMg01no233_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:11 2005
(338 letters)
>mm_chr5_82153790_82154527
Length = 738
Score = 625 bits (323), Expect = 0.0
Identities = 333/337 (98%), Gaps = 2/337 (0%)
Strand = Plus / Plus
Query: 1 tctacccttgtagatatcctacgattttaatattagatatccccgctaaagtgccttttg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tctacccttgtagatatcctacgattttaatattagatatccccgctgaagtgccttttg 260
Query: 61 ttttttgacaattgtgaatgaaactgctatcaacatttcagtgtgttcatttttgtggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttgacaattgtgaatgaaactgctatcaacatttcagtgtgttcatttttgtggct 320
Query: 121 tttttttttgtttttatttgtcattttttagtttgttttgtttttcctggttaatattca 180
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttt--gtttttatttgtcattttttagtttgttttgtttttcctggttaatattca 378
Query: 181 agtctattaagtacagagctaatgggctctgcggtaaggtctgtgtagtttggggaaaac 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 379 agtctattaagtacagagctaatgggctctgtggtaaggtctgtgtagtttggggaaaac 438
Query: 241 attgccaaactctttccaaaagtatccatgctattttgcattcacagcatcaatgaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 attgccaaactctttccaaaagtatccatgctattttgcattcacagcatcaatgaacaa 498
Query: 301 tccatgcattggttcagacatttataaattctcatga 337
|||||||||||||||||||||||||||||||||||||
Sbjct: 499 tccatgcattggttcagacatttataaattctcatga 535
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_h17.g1 MSMg01no233_h17.g1 CHROMAT_FILE:
MSMg01no233_h17.g1 PHD_FILE: MSMg01no233_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:11 2005
(640 letters)
>mm_chr5_82189395_82190433
Length = 1039
Score = 725 bits (375), Expect = 0.0
Identities = 503/607 (82%), Gaps = 96/607 (15%)
Strand = Plus / Minus
Query: 36 aaaacaaaatatttaattagtatatgaaacaaattatgtaattactaaaagtagctttat 95
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1039 aaaacaaaatatttaattagtatatgaaacaaaatatgtaattactaaaagtagctttat 980
Query: 96 tactaattccatggttaattctgaaagatggatatcagaaaattatcagtatcataacca 155
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 979 tactaattccatggttaattctgaaaaatggatatcagaaaattatcagtttcataacca 920
Query: 156 gattttcaaacatgtggatggagatatttacattttacttgctttgaacttgaagactct 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 gattttcaaacatgtggatggagatatttacattttacttgctttgaacttgaagactct 860
Query: 216 tatggaaagacttgtccttttaacctttggggactttgacgctacaccctggtggttaat 275
||||||||||||||||||||
Sbjct: 859 tatggaaagacttgtccttt---------------------------------------- 840
Query: 276 tctagacttcttttatggaaaccagaatagggatacaagtgacttttttaatgaattatt 335
|||||||||
Sbjct: 839 ---------------------------------------------------tgaattatt 831
Query: 336 ttatttgcttatcaatacatgaaatcaggaaattagcctattgcaagatttactttgaga 395
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ttatttgcttatcaatatatgaaatcaggaaattagcctattgcaagatttactttgaga 771
Query: 396 aattactttctaaaatacaactttcatttttct-cctgcaggtatacac-aaaatctgca 453
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 770 aattactttctaaaatacaactttcatttttctccctgcaggtatacacaaaaatctgc- 712
Query: 454 agaagatggtttttgagcacggcgcagataataaaatgtgttttcagtaatttcaaaact 513
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 711 --aagatggtttttgagcacggcgcagataataaaatgtgtttttagtaatttcaaaact 654
Query: 514 gctttttcaactcatagatttttattttctctcatatatttttactttgtgtatatggtg 573
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gctttttcaacttatatatttttattttctctcatatatttttactttgtgtatatggtg 594
Query: 574 tcattcctagtaaaggtaaattatagaaatatgtttgtttttgaggcagtagagtatata 633
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 593 tcattcctagtaaaggtaaattatagaaatatgtttgtttttgaggaagtagagtatata 534
Query: 634 tttcatt 640
|||||||
Sbjct: 533 tttcatt 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1039
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1029
Effective search space: 648270
Effective search space used: 648270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
