CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGTTTATCGCCCATCAAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGT
AGATGCTGGCGTGGAATGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTACAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTACCGGAGGATCCAACAATACCTCTCCTGGACA
TATACCCAGAAGATGTTTTTTCTGTTACCACCGCCACCTGCTCCACTATG
TTCATAGCAGCCTTATGTATAATATCCAGAAGCTGAAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAACTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAA
GGACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCT
AGGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGA
AAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAAC
AAAACACCCATG

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCCCAATTCACATATATATGTATATATACATAT
AATAAATAAGCATAGAATATACTTTAACTCATTGTTTTAGAAATCAGAAA
GCATTGGTTTGATTACTTTAAGTGTTTTAAATAAAGTACGATTTTGCTAT
AATAATCATATAAATGTATTTTAATGAATTATTAAACCTATACTTATAAC
ATCCTTTTGAAATTGCAGTATTTAAATTTACAATATACAAAAGAATGTCA
TACTCGGAAGCAAAACTAATACCAAGATACATGTTTTACATTATATAATA
TAATAATTAGAAATTGTTGAGTACAAATGAATTATAACTTTGTTGAGAGT
CTATATTTGTACATCTGTATGGGGTATGTCATGATGGTTTGATTCATTTA
TACGCTATGTAATAATCAAATTAGGATAAATAGCACCTCCATATGTTAAA
GAATTAATTGCTTTTGTGTGTTAAAAATATACAGTACTTTTACTTAATAA
ATAATAACAGTATTACCTAGTTTACAAAATACTTGTTTAAACAAGTTGAT
GAGAAGAATTGAAGAATCAAGTATTCAAATATACAAACCTATCAAAGCAA
TTGTAGTTAAAAACCACCCCAAAAGCTATGTGTAATGCCTCTAAGCCACC
ATAATGATCACTTTGGCAAGATGTATCTAAATGCCCAATAAGAAAACTCA
CCTAC

Query= MSMg01no233_k19.g1 MSMg01no233_k19.g1 CHROMAT_FILE:
MSMg01no233_k19.g1 PHD_FILE: MSMg01no233_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:26 2005
         (624 letters)



>mm_chr5_80824718_80825741
          Length = 1024

 Score =  895 bits (463), Expect = 0.0
 Identities = 469/471 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgttttagaaatcagaaagcattggtttgattactttaagtgttttaaataaagtacga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttgttttagaaatcagaaagcattggtttgattactttaagtgttttaaataaagtacga 412

                                                                       
Query: 61  ttttgctataataatcatataaatgtattttaatgaattattaaacctatacttataaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttttgctataataatcatataaatgtattttaatgaattattaaacctatacttataaca 352

                                                                       
Query: 121 tccttttgaaattgcagtatttaaatttacaatatacaaaagaatgtcatactcggaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tccttttgaaattgcagtatttaaatttacaatatacaaaagaatgtcatactcggaagc 292

                                                                       
Query: 181 aaaactaataccaagatacatgttttacattatataatataataattagaaattgttgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aaaactaataccaagatacatgttttacattatataatataataattagaaattgttgag 232

                                                                       
Query: 241 tacaaatgaattataactttgttgagagtctatatttgtacatctgtatggggtatgtca 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tacaaatgaattagaactttgttgagagtctatatttgtacatctgtatggggtatgtca 172

                                                                       
Query: 301 tgatggtttgattcatttatacgctatgtaataatcaaattaggataaatagcacctcca 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 171 tgatggtttgattcatttatacgctatgtaataatcaaattaggataattagcacctcca 112

                                                                       
Query: 361 tatgttaaagaattaattgcttttgtgtgttaaaaatatacagtacttttacttaataaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 tatgttaaagaattaattgcttttgtgtgttaaaaatatacagtacttttacttaataaa 52

                                                              
Query: 421 taataacagtattacctagtttacaaaatacttgtttaaacaagttgatga 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  taataacagtattacctagtttacaaaatacttgtttaaacaagttgatga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)