Query= MSMg01no233_m20.b1 MSMg01no233_m20.b1 CHROMAT_FILE:
MSMg01no233_m20.b1 PHD_FILE: MSMg01no233_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:35 2005
(321 letters)
>mm_chr5_132220325_132221042
Length = 718
Score = 578 bits (299), Expect = e-169
Identities = 310/315 (98%), Gaps = 3/315 (0%)
Strand = Plus / Plus
Query: 4 ggaattctcacaacaacaaaaacacagagtccccaaatacaagtgagcacacaaagaata 63
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 ggaattctcacaacaacaaaaacacagagtccccaaatacacgtgagcacacaaagaata 263
Query: 64 acacctgcccttggctggaatttttctgcgggggggggtcagttctttctgtgcgagcct 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 acacctgcccttggctggaatttttctgcgggggg---tcagttctttctgtgcgagcct 320
Query: 124 tcctttccaacttgtccgtcttaaggttcttctgcagtgagttaaaagaaatacgtagct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctttccaacttgtccgtcttaaggttcttctgcagtgagttaaaagaaatacgtagct 380
Query: 184 tcagagaagaccctaaaacccctctacttgggaatggccctaagaattcatcatcctaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagagaagaccctaaaacccctctacttgggaatggccctaagaattcatcatcctaga 440
Query: 244 taagatgattatacttgagcccatcttctactcagatgactgtttatctgtatcttccca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagatgattatacttgagcccatcttctactcagatgactgtttatctgtatcttccca 500
Query: 304 gaaagggttaatcca 318
|||||| ||||||||
Sbjct: 501 gaaaggtttaatcca 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 718
Length adjustment: 9
Effective length of query: 312
Effective length of database: 709
Effective search space: 221208
Effective search space used: 221208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_m20.g1 MSMg01no233_m20.g1 CHROMAT_FILE:
MSMg01no233_m20.g1 PHD_FILE: MSMg01no233_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:35 2005
(289 letters)
>mm_chr5_132354159_132354847
Length = 689
Score = 522 bits (270), Expect = e-153
Identities = 289/304 (95%), Gaps = 15/304 (4%)
Strand = Plus / Minus
Query: 1 tgtacatgatgtgtatctatgccacgtttaatttcattagctacaacgtaggaggatagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgtacatgatgtgtatctatgccacgtttaatttcattagctacaacgtaggaggatagc 308
Query: 61 tgtgctcgtttaactgctccagccagatggcagccagagccttcggaggaagaagggttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgtgctcgtttaactgctccagccagatggcagccagagccttcggaggaagaagggttc 248
Query: 121 tgcaaggtaattgaatgtgtcctgctgatggagttacaatggcccgt--------tt--- 169
||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 247 tgcaaggtaattgaatgtgtcctgctgatggagttacaatggcccgtcttcccaattaaa 188
Query: 170 ----ggtactccagtaggacagatagagaatctattccttagccacagtttttagctcac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aggaggtactccagtaggacagatagagaatctattccttagccacagtttttagctcac 128
Query: 226 aacagaggggagtgtgggtaaaatgaagtcctgcagttatggcgtacacatgggggatac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 aacagaggggagtgtgggtaaaatgaagtcctgcagttatggcgtacacatgggggatac 68
Query: 286 aagt 289
||||
Sbjct: 67 aagt 64
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
