ATGGATCCGCGGAATTCCATCTGTAGGCGTTCATTCAAAACCATAAACTA
ATATGAATAAGTACTATGAAGTAGTATTTAAATATCTACTATCCCTAAGT
AACTAAACCTTGATGATCTTTCTAACAAGAGCAGGCAGGTAGTGTTTTGA
GCAATCTCTTTGTGTATAAATGAGTGTCCTGTATACTAGATGTGATTACA
GGAGCAGTTTAGCTAATCAGTACAATATTCTAAGAGGGGGGCACTTCCTC
TTTTAAAAATATTAGAAAGGAGATGAAAACTTTTCCCCTATCATGAAGTA
AGTACCTTGAACTTTGGGGGTGTTGTGTTTTATGCCCCCCCCCCCCCCCC
TTTTTTATTTGTTTTTTTCTTTTTTTTTTTCCCCCCCCATTAAAATAAAC
AATTTTTGGGCGGGTGTCTTTTTTTCCTCCTCCTCCTTTTTTCCGCCTTT
TTTTCCTTATTACTCGTTTTTCTTTTTTTCCCTTTTGTTTCTATTTATTG
TTTTTTTGTCTCCCCTTTCTTACTTCCCCCCTTTTCTCATTTTTTTTCCA
TTCCCCCTCTCCCCCTTTTTTTTATTCCCTATTTTCGTCTTTTTCCCTTC
GCTTATTTTTCCGTTTTCCCTCCCTGTCCTTTTTTTTATTTTCTTCCCCC
CTTTTTTTTTTTTCCTCCCCTCCTTTTCCCTTTTCCTTTTCTCCCGTATT
AATTTTTACTCTTTCTACCTCCTCCCCTCTTCCCTTTTTTTTTTTCTCTT
N

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAATGAAGGGGAAGCACTTTAACA
TTAGTTTCTTCACAGCATGGGGACACTGAGCATGCAAATAACTCAGCATG
TATTGAAGATTAAAAAAAAACTCCTTTGATGAATCTTATGCTAGAAAGAT
AAGCAGCCATCTGCCAAAAGACAGTATGCATAGTTGAAGAATATTTTTGG
CAGATGAACCACAGTGGGCAAAGGTATAGGGTTGTATGAAGACAAGGAAT
CTCTATCAATTGTCAACGATAGTTAACTCAGGTGGACCTGCAATTACTCC
AAATTCCATTTTTTTTCTAGTCCGCCCCTCCACGAGACGGAAAGTGTGAG
TGGAAACCATGGCCCTGAGCGCCTATTTTCTGATTAAGTATCTCCTTACC
TGTTGTTTCTTTATTGATCCCCAAAGGCCTTAGGGTTTACTGAAATGCAC
AAGGTAGAAGCAATGATTAATGCGTCCCAGACCAAGGCGCTCACGGTGAG
GATGCCTGCCTCCTCACAGAGATGCCATTGTTTCTGTAGAAGACTGTGCC
TCGCCCTCTCACACCCCAGCCAGGGCTTCCCTAAGCAGAGTGTTTATGTG
TTGAGTGCAACACTCCATGGACTCCAGGGTCTAATGTGGTGTGAGAGGGA
ACCTGGGGTTTTTCATCTTGTTCTCAGCTGTACAAACACN

Query= MSMg01no235_e15.b1 MSMg01no235_e15.b1 CHROMAT_FILE:
MSMg01no235_e15.b1 PHD_FILE: MSMg01no235_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:35 2005
         (232 letters)



>mm_chr5_41651361_41651992
          Length = 632

 Score =  418 bits (216), Expect = e-121
 Identities = 228/232 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatccctaagtaactaaaccttgatgatctttctaacaagagcaggcaggtagtgttt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 actatacctaagtaactaaaccttgatgatctttctaacaagagcaggcaggtagtgttt 373

                                                                       
Query: 61  tgagcaatctctttgtgtataaatgagtgtcctgtatactagatgtgattacaggagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgagcaatctctttgtgtataaatgagtgtcctgtatactagatgtgattacaggagcag 313

                                                                       
Query: 121 tttagctaatcagtacaatattctaagaggggggcacttcctcttttaaaaatattagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tttagctaatcagtacaatattctaagaggggggcacttcctcttttaaaaatattagaa 253

                                                               
Query: 181 aggagatgaaaacttttcccctatcatgaagtaagtaccttgaactttgggg 232
           |||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 252 aggagatgaaaacaagtcccctatcatgaagtaagtaccttgaactttgggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no235_e15.g1 MSMg01no235_e15.g1 CHROMAT_FILE:
MSMg01no235_e15.g1 PHD_FILE: MSMg01no235_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:35 2005
         (297 letters)



>mm_chr5_41478765_41479461
          Length = 697

 Score =  567 bits (293), Expect = e-166
 Identities = 296/297 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatctccttacctgttgtttctttattgatccccaaaggccttagggtttactgaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatctccttacctgttgtttctttattgatccccaaaggccttagggtttactgaaatg 260

                                                                       
Query: 61  cacaaggtagaagcaatgattaatgcgtcccagaccaaggcgctcacggtgaggatgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaaggtagaagcaatgattaatgcgtcccagaccaaggcgctcacggtgaggatgcct 320

                                                                       
Query: 121 gcctcctcacagagatgccattgtttctgtagaagactgtgcctcgccctctcacacccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctcctcacagagatgccattgtttctgtagaagactgtgcctcgccctctcacacccc 380

                                                                       
Query: 181 agccagggcttccctaagcagagtgtttatgtgttgagtgcaacactccatggactccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccagggcttccctaagcagagtgtttatgtgttgagtgcaacactccatggactccag 440

                                                                    
Query: 241 ggtctaatgtggtgtgagagggaacctggggtttttcatcttgttctcagctgtaca 297
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtctaatggggtgtgagagggaacctggggtttttcatcttgttctcagctgtaca 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)