BAC Information

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BAC

Clone NameMSMg01-235I12
Chromosome5 (Build37)
Map Location 151,377,284 - 151,377,565
singlet/doubletsinglet
Overlap geneB230342M21Rik
Upstream gene4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2
Downstream geneBC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235I12.T7 (MSMg01no235_i12.b1)MSMg01-235I12.TJ (MSMg01no235_i12.g1)
ACCAG401075AG401076
length711709
length of high quality
(start - end)
195 (123 - 317)279 (76 - 354)
definitionCHROMAT_FILE: MSMg01no235_i12.b1 PHD_FILE: MSMg01no235_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:53 2005CHROMAT_FILE: MSMg01no235_i12.g1 PHD_FILE: MSMg01no235_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCG
GAATTCAGGTTCTCTAAAATGAAAGNTACTAAAGCTTCCTTTATAAACAG
CACCAGTAGGAAAGATGTCCCCCGTAAAAGTCAGGACTAACAAAAAAATG
CTTCTGGTTTGCATATGACATTAAATACAACAGACCTGGGATTTTATGTA
GATGACTGTTTGCCTGCATGTATGTATGTGCAGCATGTGCATGCAGTACT
CATAGAGGCCAGAAGAGGGCAACAGATCCCCTGGTATGGGCATTACAATA
CTGAGCTGTCATGTTTTATATTCTGGAATTGAACTCTGATCTTTTGCAAA
AGTTATCAGTGCTTCCCAAAACAGNACCCTCTCTNNAANCCCCAAATGGG
GTAAGAGAGAAAGCAAAACAACGCACTAGAAAGGGCATATTCTGTTTTTA
CTTGAGGATGGTGGATGAGCAGAATAACAGCCATCCCTAACTGACTCACT
TGGCCTCTCTGTGTGGTTTGTGAGTTTATGACTTCCTATCGTTCTGAGCT
GCTTCAGCCATACTGCAGGTTAGACATCAGGACCTGCAGTTATGTGACAC
GTTGATATTGCCATTTTTAAAACTTAACACTTTACAGAGGGCTAATTTTT
TATTTGTTTCTAATGACAAAGAGGATATCAAGTGTCCTGATTACCATTCT
GAGCCGTGAAG
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTGAGTAGAACCACCTATCCA
AAGGGTGAAGAGGAAACTTAAGTATTTAAGTGTGTTTATTAGCTGATAAA
TAATAATGACCTTACACATTGGTGGAGTGCAGGGGCTGCTCTGGTGGATG
TGTTCCTGCCCGAGTCAGGGGACTTAGATTATCTGCACCTCAAGAATCAT
TGTTGGGCACGAGAATGTTCTCTCTTGGCTGTTTTGATTTGTGTAATACT
AACTCTAACCTCCTCTGTTATTTCAGAGCACCACAACTTATGCATGTTGC
TCAAGTTTTTTTTCCCCCCACCCCCCTCATTTAATTCCGTTTCTAACATG
TCAAGTACTAGTGACACCAAAAAACTGTTTGAACAAGGTGGTCAGCTTAT
GGACAGATGCAAAGAACATTCAGATGTTTACACCAGAGCCTTACTCATTT
TCTAAACTCATGGAAATGGGGCCCAGGGCATGGGGCCAAGCACTGCAGAG
CAGGAGGGGCTGGGCTTGCTGGAAACAGTAAATAAAATATGTGGAGATCA
CTCTTATTTCATAAGTGGCGCTCTAAGTTACAAACCGAGGTGGGAGGAGA
TAGATCCAAGATAATCATAAGCGGCTTTAGGAATTCCCCAGGCTTGCTGT
TCACACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_i12.g1 MSMg01no235_i12.g1 CHROMAT_FILE:
MSMg01no235_i12.g1 PHD_FILE: MSMg01no235_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:53 2005
         (279 letters)



>mm_chr5_151377084_151377765
          Length = 682

 Score =  507 bits (262), Expect = e-148
 Identities = 276/282 (97%), Gaps = 3/282 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctgagtagaaccacctatccaaagggtgaagaggaaacttaagtatttaagtgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tttcctgagtagaaccacctatccaaagggtgaagaggaaacttaagtatttaagtgtgt 423

                                                                       
Query: 61  ttattagctgataaataataatgaccttacacattggtggagtgcaggggctgctctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttattagctgataaataataatgaccttacacattggtggagtgcaggggctgctctggt 363

                                                                       
Query: 121 ggatgtgttcctgcccgagtcaggggacttagattatctgcacctcaagaatcattgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggatgtgttcctgcccgagtcaggggacttagattatctgcacctcaagaatcattgttg 303

                                                                       
Query: 181 ggc---acgagaatgttctctcttggctgttttgatttgtgtaatactaactctaacctc 237
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggcacaacgagaatgttctctcttggctgttttgatttgtgtaatactaactctaacctc 243

                                                     
Query: 238 ctctgttatttcagagcaccacaacttatgcatgttgctcaa 279
           |||||| ||| |||||||||||| ||||||||||||||||||
Sbjct: 242 ctctgtgattacagagcaccacagcttatgcatgttgctcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 682
Length adjustment: 9
Effective length of query: 270
Effective length of database: 673
Effective search space:   181710
Effective search space used:   181710
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)