BAC Information

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BAC

Clone NameMSMg01-235K22
Chromosome5 (Build37)
Map Location 72,171,385 - 72,309,252
singlet/doubletdoublet
Overlap geneGabrb1
Upstream geneGabrg1, Gabra2, LOC635092, 4930503B16Rik, Gabra4
Downstream geneLOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235K22.T7 (MSMg01no235_k22.b1)MSMg01-235K22.TJ (MSMg01no235_k22.g1)
ACCAG401182AG401183
length739744
length of high quality
(start - end)
315 (45 - 359)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no235_k22.b1 PHD_FILE: MSMg01no235_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:04 2005CHROMAT_FILE: MSMg01no235_k22.g1 PHD_FILE: MSMg01no235_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,308,942 - 72,309,252)(72,171,385 - 72,171,672)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAGACTGTCAAAGGTCCTTTTCTGATGGAGATAAAACTACCCAC
ATGCAACTTCTAAAGATTTGATCTCTAATCATCTCAGTCATTTCCTGCTT
GTCACCATGTCCCCTTTCTATGTTTCTGATTTTGACCTTCAAATGCAGTG
AATGAGAAGTCACAGTGTACAGTCTGTATGTGGCACAGATTGCGGTGTGA
GCCCAGAACTCATCCACCCCATCTCAGGGCTTATGAGTTAGCACACCATC
TATAGAAGCAATTCCAGACAATGTTACCCCTTCATTAAGACCACTGAGGT
TTAATAATTGCATTAAATCNANACCTAAAACTCCATCTCAAGGTCAACCC
CAACGTTCTTTTTCTACCCTAAGAAACCAAAAACATGGTTCCAGACAAGG
AGTTTCCAAACTGCAGTGAGATTACTGAGTTGGTTTCTAACCCACCTGTT
TGTCAAGACTTTTCTCTCAGACCTCTGGAAGGTCCTCTGAGGTCATTTTC
ATTTCTCAAGCCTAGAATGAACAAATAGAAAAGGCTCGGAGCAGCATGGG
AGTTGAGCCAAGAGCAGTACTGTGAGCATCCATTTGTCCCTCCACCTACG
CTCTGAGGGGGCAGCTGTGATGTCTCGATGGGATGAGAAAAGACTCAATA
TGCATGGCAATCTGGTGCTGTGCCCATGAGACCATCATA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAGCTCCAGATGTATTGGGCAT
AGACTTTGCTCCACTTCAGAGATCATTCTTAAACATCCAGGAGACAAAGT
GCTTATTTCTTCCAGTTTCAGGAGTTGTTACGCCGTATGGGCAGGTCTTT
ATCATGCCAGTGAATCAGTGTGTCCATTCCTGTGCCCATGTGCATGTTGC
AAGGATATCTGCTTGATTGTGAATCTGGGCATGCAACAATAGGCATTTTA
TCCAAGTACGTGCTTTTCCATTTATCTTCATCATGGAGGCACAGAATTGA
ATTTCTGCCCAGATTCTTGGCACGCCCCCCCCCTTTTTCTATTAGTTTGC
GACATCAGGGACAGATTTTCCGCTTTCAAACAGACATGATATTTTAATAA
GACTCCTGAGACACATTTTTTTAATTCCCCTCCATGCTGTCTTCAAGTTT
CATTTTTGAAGCCATGACCTACTTACATGGTTCAAAAGGCCTCATGCAAG
ATGAAAATACAGATCACCTTGTCAACGATAAGGGGGCAGGGCCACGGCAC
TACACTGTCACCAGCTACACCCTGGGGAGTTCCCTCAGTCTCTTAGGGAC
CTAGACACAGGCCAAATCAGGACTCTTGATTTCAACACAGAAAAGAATTT
CAGGCATAGCCACTTTGAAGCTGAGTTGAAAAATTAAGAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_k22.b1 MSMg01no235_k22.b1 CHROMAT_FILE:
MSMg01no235_k22.b1 PHD_FILE: MSMg01no235_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:04 2005
         (315 letters)



>mm_chr5_72308738_72309452
          Length = 715

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatagactgtcaaaggtccttttctgatggagataaaactacccacatgcaact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattccatagactgtcaaaggtccttttctgatggagataaaactacccacatgcaact 456

                                                                       
Query: 65  tctaaagatttgatctctaatcatctcagtcatttcctgcttgtcaccatgtcccctttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tctaaagatttgatctctaatcatctcagtcatttcctgcttgtcaccatgtcccctttc 396

                                                                       
Query: 125 tatgtttctgattttgaccttcaaatgcagtgaatgagaagtcacagtgtacagtctgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tatgtttctgattttgaccttcaaatgcagtgaatgagaagtcacagtgtacagtctgta 336

                                                                       
Query: 185 tgtggcacagattgcggtgtgagcccagaactcatccaccccatctcagggcttatgagt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 335 tgtggcacagattgcggtgtgagcccagaactcatccaccccatctcaggacttatgagt 276

                                                                       
Query: 245 tagcacaccatctatagaagcaattccagacaatgttaccccttcattaagaccactgag 304
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 275 tagcacaccatctatagaagcaattccagacaatgcaaccccttcattaagaccactgag 216

                      
Query: 305 gtttaataatt 315
           |||||||||||
Sbjct: 215 gtttaataatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no235_k22.g1 MSMg01no235_k22.g1 CHROMAT_FILE:
MSMg01no235_k22.g1 PHD_FILE: MSMg01no235_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:04 2005
         (288 letters)



>mm_chr5_72171185_72171872
          Length = 688

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagctccagatgtattgggcatagactttgctccacttcagagatcattcttaaacat 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagctccagacgtattgggcatagactttgctccacttcagagatcattcttaaacat 260

                                                                       
Query: 61  ccaggagacaaagtgcttatttcttccagtttcaggagttgttacgccgtatgggcaggt 120
           |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 261 ccaggagacaaagtgcttatttcttccagtctcaggagttgttacgcagtatgggcaggt 320

                                                                       
Query: 121 ctttatcatgccagtgaatcagtgtgtccattcctgtgcccatgtgcatgttgcaaggat 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ctttatcatgccagtgaatcagtgtgcccattcctgtgcccatgtgcatgttgcaaggat 380

                                                                       
Query: 181 atctgcttgattgtgaatctgggcatgcaacaataggcattttatccaagtacgtgcttt 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctgtttgattgtgaatctgggcatgcaacaataggcattttatccaagtacgtgcttt 440

                                                           
Query: 241 tccatttatcttcatcatggaggcacagaattgaatttctgcccagat 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccatttatcttcatcatggaggcacagaattgaatttctgcccagat 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)