BAC Information

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BAC

Clone NameMSMg01-235P05
Chromosome5 (Build37)
Map Location 102,542,095 - 102,542,459
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1, Wdfy3, EG666515, EG666527
Downstream geneLOC625780, Arhgap24, Mapk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235P05.T7 (MSMg01no235_p05.b1)MSMg01-235P05.TJ (MSMg01no235_p05.g1)
ACCAG401356AG401357
length763742
length of high quality
(start - end)		369 (46 - 414)341 (77 - 417)
definitionCHROMAT_FILE: MSMg01no235_p05.b1 PHD_FILE: MSMg01no235_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:23 2005CHROMAT_FILE: MSMg01no235_p05.g1 PHD_FILE: MSMg01no235_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAACTTTTCCTTGGCTATGTCTGACATAGCGATAGCGAGTTTGT
CTTCCAGCACAGCAGTGGTGCTTGCCGAGCCCGCACTAGACACGAAAAGA
ACCCGTGAGCACAGTCCCACCCCCACCCTCACCCCCTCCCCCTCCCGGTC
CCTGTGCTGAACGCTCCAGTTGCTGTACTTTCCCGTGCTGACCTTCTCCT
TACCTTGCTTCCCCTCTTATCTGTCCTCCATGCTGCTGACTCGTCCGTCA
CCATGACAACGATCTCACTAAGTTCAGAAAAGCTCCTTCTTGCAGTAGTA
GCTTTAGCACAGAGACCCACAACTAGACAACTAGGCAGACAGTGAGAAAC
TTTGAAGCACCCACCCCCCCCCCGANATGTTTTCATCAAAGCCCTGCCCT
CGGGGCTCCGGGAGCTATACAGGAAAGGAATAGGAGCCATGTTAGGAGCC
AGAGGTGTTTGGCAATTCCAAGGAAACCGTGTCTTCCATACACCATTGGA
CTGATTGCTTCATGATCTCCTTCACATTGTGTTGTTGTTTCACCGTTTCC
CTCATGTTTCTGGTTAATATTGCCCCCCTATCTCTATATATCCAACAAAG
TGGTTCTTATTTTGTCCCCTCTCCCCTTTCTTTTACCCCTGTTTTTGCTT
TTTCTTTCATACTCCACCCTTTTTTCCCTATTATTTCCCTACCCCTTTAA
TTTTTTTTTCTAT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTCGGCATTTATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACCCCCCCTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTACAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCCTCCTGA
GTGAGGTAACACATTCACAAAGAAACTTCACACAATATGTATTCCCTGAT
CAGTGTATATTATCCCCAACCCTAAGGATACCCATAAATAGGATATACTT
TTGCTAAACACTTGTTCATTAAGGGATATGGAAAACTGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_p05.b1 MSMg01no235_p05.b1 CHROMAT_FILE:
MSMg01no235_p05.b1 PHD_FILE: MSMg01no235_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:23 2005
         (369 letters)



>mm_chr5_102541834_102542602
          Length = 769

 Score =  698 bits (361), Expect = 0.0
 Identities = 364/365 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctaacttttccttggctatgtctgacatagcgatagcgagtttgtcttccagc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggaattcctaacttttccttggctatgtctgacatagcgatagcgagtttgtcttccagc 567

                                                                       
Query: 64  acagcagtggtgcttgccgagcccgcactagacacgaaaagaacccgtgagcacagtccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acagcagtggtgcttgccgagcccgcactagacacgaaaagaacccgtgagcacagtccc 507

                                                                       
Query: 124 acccccaccctcaccccctccccctcccggtccctgtgctgaacgctccagttgctgtac 183
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 506 acccccaccctcaccccctccccctcccggtccctgtgctgaacgcaccagttgctgtac 447

                                                                       
Query: 184 tttcccgtgctgaccttctccttaccttgcttcccctcttatctgtcctccatgctgctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tttcccgtgctgaccttctccttaccttgcttcccctcttatctgtcctccatgctgctg 387

                                                                       
Query: 244 actcgtccgtcaccatgacaacgatctcactaagttcagaaaagctccttcttgcagtag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 actcgtccgtcaccatgacaacgatctcactaagttcagaaaagctccttcttgcagtag 327

                                                                       
Query: 304 tagctttagcacagagacccacaactagacaactaggcagacagtgagaaactttgaagc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tagctttagcacagagacccacaactagacaactaggcagacagtgagaaactttgaagc 267

                
Query: 364 accca 368
           |||||
Sbjct: 266 accca 262


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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