Query= MSMg01no236_c09.b1 MSMg01no236_c09.b1 CHROMAT_FILE:
MSMg01no236_c09.b1 PHD_FILE: MSMg01no236_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:39 2005
(237 letters)
>mm_chr5_46031551_46032187
Length = 637
Score = 406 bits (210), Expect = e-118
Identities = 228/234 (97%)
Strand = Plus / Minus
Query: 1 tgtatttaatacatggactcctgtgaccctgatcaccagagatttttgtcccatggagtt 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 434 tgtatttaatacatggactcctgtgaccctgatcaccaaagatttttgtcccacggagtt 375
Query: 61 gtgggataagcctaaggttctcttggttgctcctctgggtgctctgtaatgcctgggagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gtgggataagcctaaggttctcttggttgctcctctgggtgctctgtaatgcctgggagg 315
Query: 121 tagacaggggctcacagttgtggtatcactgtccccatttcacatccaactgccgtttgt 180
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 314 tagacaggggttcacagttgtggtatcactgtccccatttcacacccaactgccgtttgt 255
Query: 181 aatcacctgatcttatagttaatttttcccacctataaaatgagtattgttatt 234
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aatcacctgatcaaatagttaatttttcccacctataaaatgagtattgttatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no236_c09.g1 MSMg01no236_c09.g1 CHROMAT_FILE:
MSMg01no236_c09.g1 PHD_FILE: MSMg01no236_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:39 2005
(547 letters)
>mm_chr5_45880638_45881584
Length = 947
Score = 938 bits (485), Expect = 0.0
Identities = 530/545 (97%), Gaps = 1/545 (0%)
Strand = Plus / Plus
Query: 1 ctaaatttttcactcctagaattccctcagtttgttgtctttactcattctatttccgtt 60
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 202 ctaaatttttcactcctagaattccctcagtttgttgtctttattgattctatttccgtt 261
Query: 61 ttcatgtcttgaacaattctattaattttttctacttttttgtgttttctggaatttctt 120
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 262 ttcatgtcttgaacaattctattaatttcttccacttttttgtgttttctggaatttctt 321
Query: 121 taagggattcagctctttcctctttaaagatgaccttaagtacctcaatcatctttatat 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taagggattcagccctttcctctttaaagatgaccttaagtacctcaatcatctttatat 381
Query: 181 agttggttttaaggtcttttatttgtgcttcaaatatgttgtaatattctgagcttgcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agttggttttaaggtcttttatttgtgcttcaaatatgttgtaatattctgagcttgcca 441
Query: 241 tgttaggatagctgggtatagtggagacatattgccctggatattttttattgcgctttt 300
|| |||||||||||||||||||||||||||||||||||||| |||||| |||| | ||||
Sbjct: 442 tggtaggatagctgggtatagtggagacatattgccctggacattttt-attgtgttttt 500
Query: 301 atgctggcatctaggcatctggatttaagaagataacagatctaggtgctgatttctggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgctggcatctaggcatctggatttaagaagataacagatctaggtgctgatttctggt 560
Query: 361 tttgttgcatgggtgtttttgtttcttggtttctgtttccattctgtagttttggagagt 420
|||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 561 tttgttgcgtgggtgtttttgttccttggtttctgtttcctttctgtagttttggagagt 620
Query: 421 atgaaggctatgtgttgcctgatttccaggcctgctcagctggtgtgttcacaggaaata 480
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 atgaaggctgtgtgttgcctgatttcctggcctgctcagctggtgtgttcacaggaaata 680
Query: 481 cctgctcgtaaggatcctgggatgacgtggggaaggaaggttaagagagaaggtctttat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgctcgtaaggatcctgggatgacgtggggaaggaaggttaagagagaaggtctttat 740
Query: 541 gatct 545
|||||
Sbjct: 741 gatct 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
