BAC Information

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BAC

Clone NameMSMg01-236I22
Chromosome5 (Build37)
Map Location 9,765,882 - 9,766,255
singlet/doubletsinglet
Overlap genenone
Upstream geneEG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3
Downstream geneLOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236I22.T7 (MSMg01no236_i22.b1)MSMg01-236I22.TJ (MSMg01no236_i22.g1)
ACCAG401775AG401776
length740743
length of high quality
(start - end)
173 (110 - 282)357 (387 - 743)
definitionCHROMAT_FILE: MSMg01no236_i22.b1 PHD_FILE: MSMg01no236_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:09 2005CHROMAT_FILE: MSMg01no236_i22.g1 PHD_FILE: MSMg01no236_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAAACGACTCACTATTTCCGAGGTGCGCGGAATCCATGGGTTT
GCTTTATGGAAAGNGAAGTCGCCCATATTTGTAGGGGGTGGTTCTGACAC
TTTCTTCAACCAGGAGTCTGTGTTTACTGACATTGAAGTTCCTTGGCCTC
AATTGGTTTCTGATAGATCAATAAAATTGCCAGTAGCCAAGGGCTGAGCA
TGGGCTAGGACAATGAGAGTTGTGTGGGGTAGGATGTTTTGAGAATTGGG
AGACTGGGAGAGAGAAAAGGGGACACAATAGCTGAGGAGATAAGCCAACC
TTTCAATGGTTTGGGGAAGCGGGCACCGGCCAGAACCGCATTTTTTTTTT
CCCCCCCCCCCCCCCATTTAGGAGTGTCCAGTCATTGAGATAGCTAACAC
CTTTTTTATAAAAATAAATTTTTACGAGCGGGGATTTCCTTCTTTTACAT
TTCAAATGCTATTCCAAAAGTCCCCCATACCCTCTCTGTCATTCCCCTAC
CTTACTACTTTCATATCTTGGCGATGACTTTCCCCTGCCCTGAATCCAAT
TAAAATTGCATGACCAACGTGTCTATTCTTTATACCGACCGTTCATTACC
CCCATCTTCTGATACTATTGCTACCCACAACAATGATACCACGTTTTTTT
TTTTTTTTCACTCCGAACCGCCCGTAAATAATATTATACAGCTTCAGCAA
CTTCAACGCACTTAATTGCGGAATTTATTTTAACCCACTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATACAAAGTTCATATACAACAAT
GATGATAAAATACTGCTAATATCACTCACATGATGCAACATGGGATTGGG
GACCATTTTTATCATAAAGTGGTTCATGGGAGCCTCGCTTCTCCTCAGTG
CTCATCTTCTTGATATGTTCAGGGATTCTCTAGGAAAAAGACACACTTTA
AGCCAAATAACACCACTTACTGCTTAATTCTAAATTTATCAATAAGAATT
CTGAATCAAAGTTATTATCTCATAATATCAATACATATGAAAATCAAGAC
GTCTACAATGCCCTCATATTAAAATTCACCACCCGCAAAAATATAGACTT
TTACCTACACCATAAAATCTCCTGACAATTAGAAAAATAATAATTTTAAG
TAAATAAAACCCTACTTGCACACATAGAATAAATCTGGCTTATTATTTAC
AGTGAGTACAGTGATGGAAGAGTACTTCCAATTATTATAATAATTTATAC
ACAGATTTGAGACTGACACTGTCATGCCCATGATTGTGGTTTGGTTTGGT
TTAGAATGAATCTTATGTTTGTTCTAGTTAAATTTTAAAAAGAAATTATT
GAAGATGTTGGATTTAATGTAAAACATAAAATAAAGATTCTACTCAATGT
AATTTACATATTATATATCATTTTCAACAAATACCATTTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_i22.g1 MSMg01no236_i22.g1 CHROMAT_FILE:
MSMg01no236_i22.g1 PHD_FILE: MSMg01no236_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:09 2005
         (357 letters)



>mm_chr5_9765558_9766319
          Length = 762

 Score =  611 bits (316), Expect = e-179
 Identities = 352/374 (94%), Gaps = 17/374 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaatatagacttttacctacaccataaaatctcctgacaattagaaaaataataattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aaaaatatagacttttacctacaccataaaatctcctgacaattagaaaaataataattt 639

                                                                       
Query: 61  taagtaaataaaaccctacttgcacacatagaataaatctggcttattatttacagtgag 120
           || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 638 taggtaaataaagccctacttgcacacatagaataaatctggcttattatttgcagtgag 579

                                                                       
Query: 121 taca------------gtgatggaagagtacttccaattattataataatttatacacag 168
           ||||            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tacatatcaacatctggtgatggaagagtacttccaattattataataatttatacacag 519

                                                                       
Query: 169 atttgagactgacactgtcatgcccatgattg-----tggtttggtttggtttagaatga 223
           ||||||||||||||||||||||||||||||||     |||||||||||||||||||||||
Sbjct: 518 atttgagactgacactgtcatgcccatgattgtggtttggtttggtttggtttagaatga 459

                                                                       
Query: 224 atcttatgtttgttctagttaaattttaaaaagaaattattgaagatgttggatttaatg 283
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 458 atcttatgtttgttctagttaaattttaaaaagaaattattgaagatcttggatttaatg 399

                                                                       
Query: 284 taaaacataaaataaagattctactcaatgtaatttacatattatatatcattttcaaca 343
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 398 taaaacataaaataaagattctactcaatgtaatttacatattgtatatcattttcaaca 339

                         
Query: 344 aataccatttgtgt 357
           ||||||||||||||
Sbjct: 338 aataccatttgtgt 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 762
Length adjustment: 9
Effective length of query: 348
Effective length of database: 753
Effective search space:   262044
Effective search space used:   262044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)