BAC Information

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BAC

Clone NameMSMg01-236K20
Chromosome5 (Build37)
Map Location 133,521,922 - 133,522,265
singlet/doubletsinglet
Overlap genenone
Upstream geneAuts2
Downstream geneLOC100039731, LOC666038, LOC100039750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236K20.T7 (MSMg01no236_k20.b1)MSMg01-236K20.TJ (MSMg01no236_k20.g1)
ACCAG401863AG401864
length738752
length of high quality
(start - end)
343 (372 - 714)190 (129 - 318)
definitionCHROMAT_FILE: MSMg01no236_k20.b1 PHD_FILE: MSMg01no236_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:18 2005CHROMAT_FILE: MSMg01no236_k20.g1 PHD_FILE: MSMg01no236_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGGG
AGTTCGCTCTACCACTGAGCCACTGCCGCTGCCCCCCCCCCCCAGCCCCT
CACTGGGAGATTCTAGGCAGCGGCTCTACCACTGAGCCATACTCCTGGCT
TCACACTGGGGAATTCTAGGCAGGGAAATCTACCACTGAGTCACACTCCC
AGGTCCTCAATGCTGGATTCTACGTAAGTACTCTACTGCTGAGCCATATC
CCAGTAGGGCATTCTAGACAGGTGCTCTATCACTAAACCATGCTGCCAGG
CCCTTATTGTGGTATTCTATGCAGAATTCTAATGTTAAACCATTTAAGTG
TGTTTACACTGACCCACGCCTTCAGCCCTCTTTTTTATTTTTATTTATTT
ATTTTTGCTTTGAGCTATTTTCTCACTTAGACTCCCAGCCTCTCCTAAAC
CTTTCTCTGTAACTCCACTAGCCTTGAATTTGCAGTATCCTTTCTTTCCC
ATCCTGTGTAATTGAGATGACAGGCCTCCACTACCACCTCTGGCTGCAGT
CTTTCTCATAGAGCTCCAAACCTTTAGATCATGCATACCACACCCAACCC
CTTAATCTTTCAAGCTGGCATGGACAGATGTGACTATGAGAGTTGGTACT
CCAGTAGATATTCACTGTGGCCTGACCACTCTTGAGAGAAACTGAAGCTT
GGAGGGGAACTTAGGGGGAGTCCCGATGAATAAACAAG
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACACAGGAGGNGA
CACTATAGAAGTTTTCACAAAAATCTGTACCTCAGATTCAACACATAGAA
AGATGAAAATATGCATAATTATTCCCGTTGCATCTCTATTGAGTATGTGG
ATACTTATTCTTGTTATGATTTAAAAAAACCAGTTATTTACATTGCATTA
CATGCTACAGGCAGTGTAGAGGTTGCCGAATGTGTACAGGGCATGAATAC
AGGTTATCTGCAAATATTATGCCATTTTATATCTGAAGCTTAAACATGCT
TTGAATCTGATATCCTCATTGATANTGTAATCAATACCCCATGGATACTG
AGAAATGTTTTCATCNTTCTCTATACGGNACCCACAAATACCCAACCCAC
AAAGAGCTGTATTTAGTGTTCAAAAAAAAGAGAGAAGCAGCTGTTGTGTT
AGAAACATAGAAGTTCCAATCACTGTTTTAAGGCTTATAGAGGCTACTTA
GCTTGGGCTGGGGAGGTGGCTCAGTGGGTAGGGAGTTTGGATGCCTAGAA
CCCGTATAAACCTGGATGCTGTGACAGGTCATCTCTAATCTCTATGGCCA
GATAGAAGGTAGAGACAGAACAGTCATCAGTTGCTCATGGGCCTGAACAA
TAAGAGAACACTTGTCAAACAATGGCGAAGTCAAGTCAAGGACCAACACT
GAGGTTGTCCTATGACCTCTACACACATATGTATGGCATGTACTCATAAC
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_k20.b1 MSMg01no236_k20.b1 CHROMAT_FILE:
MSMg01no236_k20.b1 PHD_FILE: MSMg01no236_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:18 2005
         (343 letters)



>mm_chr5_133521687_133522430
          Length = 744

 Score =  611 bits (316), Expect = e-179
 Identities = 337/344 (97%), Gaps = 1/344 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagccctcttttttatttttatttatttatttttgctttgagctattttctcacttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tcagccctcttttttatttttatttatttatttttgctttgagctattttctcacttaga 520

                                                                       
Query: 61  ctcccagcctctcctaaacctttctctgtaactcc-actagccttgaatttgcagtatcc 119
           |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 519 ctcccagcctctcccaaacctttctctgtaactccggctagccttgaatttgcagtatcc 460

                                                                       
Query: 120 tttctttcccatcctgtgtaattgagatgacaggcctccactaccacctctggctgcagt 179
           |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 459 tttctttcccatcctgtgtaatcgagatggcaggcctccactaccacctctggctgcagt 400

                                                                       
Query: 180 ctttctcatagagctccaaacctttagatcatgcataccacacccaaccccttaatcttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctttctcatagagctccaaacctttagatcatgcataccacacccaaccccttaatcttt 340

                                                                       
Query: 240 caagctggcatggacagatgtgactatgagagttggtactccagtagatattcactgtgg 299
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 339 caagctggcatggacagatgtgactatgagagttggtactcaagtagatattcactgtgg 280

                                                       
Query: 300 cctgaccactcttgagagaaactgaagcttggaggggaacttag 343
           || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cccgaccactcttgagagaaactgaagcttggaggggaacttag 236


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 744
Length adjustment: 9
Effective length of query: 334
Effective length of database: 735
Effective search space:   245490
Effective search space used:   245490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)