Query= MSMg01no236_n13.b1 MSMg01no236_n13.b1 CHROMAT_FILE:
MSMg01no236_n13.b1 PHD_FILE: MSMg01no236_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:30 2005
(589 letters)
>mm_chr5_59145854_59146843
Length = 990
Score = 1027 bits (531), Expect = 0.0
Identities = 573/589 (97%), Gaps = 7/589 (1%)
Strand = Plus / Minus
Query: 4 aattctcctga---tttccgtcaagagggtggctgcctaatcagcttatgtaagtctcct 60
||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aattctcctgaggg--tcagtcaagagggtggctgcctaatcagcttatgtaagtctcct 732
Query: 61 gacctccctgagtctccatttctatcaattatccactggagaagattggctgatggttta 120
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 731 gacctccctgagtctctatttctatcaatcatccactggagaagattggctgatggttta 672
Query: 121 atacaatttaataacatactcaattaaagtaacatatgcatttttatcaattactttctt 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 671 atacaatttaataacatactcaattaaggtaacatatgcatttttatcaattactttctt 612
Query: 181 tacttgagctatttgaaaacacctatgattgatctttcctgagctagaaagtcacttatg 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tatttgagctatttgaaaacacctatgattgatctttcctgagctagaaagtcacttatg 552
Query: 241 ttgattaatagacattaaaatgatactaaattgattttattgattaatccattcaaatac 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 551 ttgattaatagacattaaaatgatactaaattgattttattgatgaatccattcaaatac 492
Query: 301 atgaatgctacaagataactaatattgacttttttgagacatttcaccaatttatcaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atgaatgctacaagataactaatattgacttttttgagacatttcaccaatttatcaaaa 432
Query: 361 ataatatgtcatatttttaaaataacatattttgaaaactctgtaaaga-gtgtcagttc 419
||||||||||| ||||||||||||| ||||||||||||||||||||| | ||||||||||
Sbjct: 431 ataatatgtcacatttttaaaataatatattttgaaaactctgtaaa-atgtgtcagttc 373
Query: 420 tatatgcatgcaagcttgaatgacattttctatcttgactcttcatactttaataaaaat 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 372 tatatgcatgcaagcttgaatgacattttctatcttgactcttcaaactttaataaaaat 313
Query: 480 caaatgacctcaataaaccttctgtgttcattttaaaagtaaacagatttaaagtacatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caaatgacctcaataaaccttctgtgttcattttaaaagtaaacagatttaaagtacatt 253
Query: 540 aacatttcctgaggaacaattcccattgagtcttgaatgttaattctcg 588
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aacatttcctgaggaacaattcccattgagtcttgaatgttaattctcg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 990
Length adjustment: 10
Effective length of query: 579
Effective length of database: 980
Effective search space: 567420
Effective search space used: 567420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_n13.g1 MSMg01no236_n13.g1 CHROMAT_FILE:
MSMg01no236_n13.g1 PHD_FILE: MSMg01no236_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:31 2005
(246 letters)
>mm_chr5_59000851_59001501
Length = 651
Score = 416 bits (215), Expect = e-121
Identities = 240/251 (95%), Gaps = 5/251 (1%)
Strand = Plus / Plus
Query: 1 tgttcaggccgactctctttagagtatgcagaatacggaaccttctgcccttactccttt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tgttcaggccgactctctttagagtatgcagaatacggaaccttctgctcttactccttt 260
Query: 61 ccaaacagaaaaatccatagattaagttgcaactgagggatgagttgaaatatatttgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ccaaacagaaaaatccatagattaagttgcaactgagggatgagttgaaatgtatttgat 320
Query: 121 gcacacattttttaaatgctatgaataccaaatgtcatcataatat-----aaacaaata 175
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gcaaacattttttaaatgctatgaataccaaatgtcatcataatatcctataaacaaata 380
Query: 176 tattgagtagaattgtataagcccactttaatatatgctaccttctgtttttcttagaat 235
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tattgagcagaattgtataagcccactttaatatatgctatcttctgtttttcttagaat 440
Query: 236 gttctatggtg 246
|| ||||||||
Sbjct: 441 gtcctatggtg 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 651
Length adjustment: 9
Effective length of query: 237
Effective length of database: 642
Effective search space: 152154
Effective search space used: 152154
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
