Query= MSMg01no237_l22.b1 MSMg01no237_l22.b1 CHROMAT_FILE:
MSMg01no237_l22.b1 PHD_FILE: MSMg01no237_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:38 2005
(640 letters)
>mm_chr5_10464482_10465519
Length = 1038
Score = 870 bits (450), Expect = 0.0
Identities = 490/504 (97%), Gaps = 2/504 (0%)
Strand = Plus / Minus
Query: 1 tgcgaaggcaacagtgaatgggggggcaatatttggaatataaatagatcaagtaattta 60
||||| |||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct: 502 tgcgagggcaacagtgaa--ggggggcaatatttggaatataaatagataaaataattta 445
Query: 61 atattaaaggatactttttgaaatgaatggaagtcatgaaaatcagctagcaaagaaaca 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atattaaaggaaactttttgaaatgaatggaagtcatgaaaatcagctagcaaagaaaca 385
Query: 121 tgagctatctctattaataacctataatcatgttttctttctatctaaagaaacaaagta 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgagctatctccattaataacctataatcatgttttctttctatctaaagaaacaaagta 325
Query: 181 gaatttagttgacaaactgtgtgtatctactttttataatctacttaaaaatactgaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaatttagttgacaaactgtgtgtatctactttttataatctacttaaaaatactgaatg 265
Query: 241 gaaagactgatctaaagttatctttcttggttgagttgtatggtttagctatcaagttga 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 gaaagactgatctaaagttatctttcttggttgagttgtatggtttagctgtcaagttga 205
Query: 301 ctttgatttgtctatctggttgattttatccaagaaccaattctttattttattcattcc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctttgatttgtctatctggttgattttatccaagaaccaattctttattttattcattct 145
Query: 361 ttgtattgttctctatgtttctattttgtttatttcagccttcagtttgaatatttcctg 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 144 ttgtattgttctctatgtttctattttgtttatttcagccttcagcttgaatatttcctg 85
Query: 421 tctactactcctattaagtgtgttcgcatctttttggtctagagttgtcaggtatgctgt 480
||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct: 84 tctactactcctattgagtgtgttcacatctttttggtctagagttatcaggtatgttgt 25
Query: 481 taagtccctagcatgagataaaga 504
||||||||||||||||||||||||
Sbjct: 24 taagtccctagcatgagataaaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1038
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1028
Effective search space: 647640
Effective search space used: 647640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_l22.g1 MSMg01no237_l22.g1 CHROMAT_FILE:
MSMg01no237_l22.g1 PHD_FILE: MSMg01no237_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:38 2005
(669 letters)
>mm_chr5_10434451_10435519
Length = 1069
Score = 1249 bits (646), Expect = 0.0
Identities = 661/666 (99%), Gaps = 1/666 (0%)
Strand = Plus / Plus
Query: 5 gaattctataattcttctatattttaatatacttgtgtgtgtgtgtatgttcttgtggaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctataattcttctatattttaatatacttgtgtgtgtgtgtatgttcttgtggaa 264
Query: 65 tatatgtgcttgtatgatatatgtattgaggatgttgtatgccctgtctcatctctattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatatgtgcttgtatgatatatgtattgaggatgttgtatgccctgtctcatctctattt 324
Query: 125 atattgtgagacaaggtctctcactgaacaggaagctatgaacaggaaacaaactcagaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atattgtgagacaaggtctctcactgaacaggaagctatgaacaggaaacaaactcagaa 384
Query: 185 aatctccagtctcaccttacatagctggtctttcaatttcataaatcactgtgcaaggtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatctccagtctcaccttacatagctggtctttcaatttcataaatcactgtgcaaggtt 444
Query: 245 ggagacattttacccacttagtcatgtcctcacctccatttcacatattgcaaaacaata 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggagacattttaccaacttagtcatgtcctcacctccatttcacatattgcaaaacaata 504
Query: 305 actctcatgccataaattattttatttgcttaaatgacagtaaaattatagttatactat 364
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 actctcatgccataaattattttatttgtttaaatgacagtaaaattatagttatactat 564
Query: 365 aacaaacattctattcctgctatcatagttcatgttttagaaacacaatgttt-aacttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 565 aacaaacattctattcctgctatcatagttcatgttttagaaacacaatgttttaacttt 624
Query: 424 taaaagtttaggaaattcagtttctaataaactagaaaaagcctggtgtggtaatgtgta 483
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaaagttaaggaaattcagtttctaataaactagaaaaagcctggtgtggtaatgtgta 684
Query: 484 atggtaatattaagttgagttaagtgttcatgaccttgtttatctaaaagatattagagt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atggtaatattaagttgagttaagtgttcatgaccttgtttatctaaaagatattagagt 744
Query: 544 tagagagttataaacatacatacaatctgttacttcagggtttctcagagctttatgctg 603
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tagagagttataaacgtacatacaatctgttacttcagggtttctcagagctttatgctg 804
Query: 604 aagccattccactctggggacctcttaaggaaacaaattctagagtggacccagtcaccc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aagccattccactctggggacctcttaaggaaacaaattctagagtggacccagtcaccc 864
Query: 664 agttat 669
||||||
Sbjct: 865 agttat 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
