Query= MSMg01no237_n09.b1 MSMg01no237_n09.b1 CHROMAT_FILE:
MSMg01no237_n09.b1 PHD_FILE: MSMg01no237_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:45 2005
(653 letters)
>mm_chr5_99843037_99844089
Length = 1053
Score = 1193 bits (617), Expect = 0.0
Identities = 642/653 (98%), Gaps = 6/653 (0%)
Strand = Plus / Plus
Query: 6 ggaattccacaatgtgcaagctttgactgagcagataaaggagccgaggaaaaggagaca 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattccacaatgtggaagctttgactgagcagataaaggagccgaggaaaaggagaca 265
Query: 66 gcgttggctgtgcacactctgccaaccactgagaggcaatgggacagacattttatcagg 125
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gcgttggctgtgcagactctgccaaccactgagaggcaatgggacagacattttatcagg 325
Query: 126 ctattaaagaggcctgaggtctgctaagccttgttactcatgaggagtacatatcgagat 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctattaaagaggcctgaggtctgctaagccttgttactcatgaggagtacatatcgagat 385
Query: 186 tatattttccccccactggtgtatgctcatcagatgcgggggtgggggtactgagccata 245
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 386 tatattttctccccactggtgtatgctcatcagatgcgagggtgggggtactgagccata 445
Query: 246 tgaggtcattttcatacaaatatctaatgcactggagcgtattcccccactgaaacctcc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgaggtcattttcatacaaatatctaatgcactggagcgtattcccccactgaaacctcc 505
Query: 306 atttcctctcccattagttcttctggttcccctgatactttcgtttctgctttcatgtca 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atttcctctcccattagttcttctggttcccctgatactttcgtttctgctttcatgtca 565
Query: 366 tatacacaaatctgattttatgtctctatacagaatgagagaaacatggcagcatttggc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tatacacaaatctgattttatgtctctatacagaatgagagaaacatggcagcatttggc 625
Query: 426 tctctgagactgacttaattcgtttaacaccgttatctgcaattgtacctgttttcttgc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tctctgagactgacttaattcgtttaacaccgttatctgcaattgtacctgttttcttgc 685
Query: 486 aaacagcataacatcatccttcattgtagctttagaaaaatccattgtgccacacaccac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aaacagcataacatcatccttcattgtagctttagaaaaatccattgtgccacacaccac 745
Query: 546 attttttttttagaaaattatgcttttttt-----aaagaaatagcttccttgtatcttg 600
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 746 atttttttta-agaaaattatgcttttttttttttaaagaaatagcttccttgtatcttg 804
Query: 601 cggatattttcccatgtaagatagagatcaagtggcctgcttgtccttggaga 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cggatattttcccatgtaagatagagatcaagtggcctgcttgtccttggaga 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_n09.g1 MSMg01no237_n09.g1 CHROMAT_FILE:
MSMg01no237_n09.g1 PHD_FILE: MSMg01no237_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:45 2005
(615 letters)
>mm_chr5_99880592_99881608
Length = 1017
Score = 901 bits (466), Expect = 0.0
Identities = 545/586 (93%), Gaps = 29/586 (4%)
Strand = Plus / Minus
Query: 1 tcttcccaaagcttaaagctaactctgatttatcccccaattcactgcaagcttttgttc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 859 tcttcccaaagcttaaagctaactctgatttatcccccaattcacggcaagcttttgttc 800
Query: 61 cgctgctgcctgtgtgggctgggacatccttagtta-cagggtgcaggtgcaattttgct 119
|||||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||
Sbjct: 799 cgctgctgcctgtgtgggctgggacacccttagttagaaggatacaggtgcaattttgct 740
Query: 120 agtagctaaatctggtcccttgataacttccaaaggcaatggcttcccctggcagtcacc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agtagctaaatctggtcccttgataacttccaaaggcaatggcttcccctggcagtcacc 680
Query: 180 atggctgtggcatagttgtgtggtca--------------------gatatttttcacaa 219
|||||||||||||||||||||||||| ||||||||||||||
Sbjct: 679 atggctgtggcatagttgtgtggtcagactactaaccactgcctctgatatttttcacaa 620
Query: 220 acgcttaggtatgaagacactgcagtctcagatccccccc--ttttttctctcttgagaa 277
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 619 acgcttaggtatgaagacactgcagtctcagatcccccccctttttttctctcttgagaa 560
Query: 278 ttgagtcacacacatagctgattacagagggaacaagtgggtcacatgatataagccagc 337
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 559 ttgagtcacacacacagctgattacagagggaacaagtgggtcacatgacataagccagc 500
Query: 338 cctcagttcctgtctcaatcttctctttctcacctaataaacgaacaggccagaggtcac 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 499 cctcagttcctgtctcaatcttctctttctcacctaataaacgaacaggccagagatcac 440
Query: 398 caaggtgtcacactatctcaagttcagccatagattttctttcttttcttttcttttctt 457
||||||||||||||||||||||||||||||||||||| |||| ||| |||| |||||||
Sbjct: 439 caaggtgtcacactatctcaagttcagccatagatttccttt--tttgttttgttttctt 382
Query: 458 ttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttctt 517
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tt-tttt--tttcttttcttttcttttcttttcttttcttttcttttcttttcttttctt 325
Query: 518 ttcttttcttttctcttcttttctctctctctctctctctctctct 563
|||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 324 ttcttttcttttcttttcttttct-tctctctctctctctctctct 280
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1017
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1007
Effective search space: 609235
Effective search space used: 609235
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
