Query= MSMg01no237_n13.b1 MSMg01no237_n13.b1 CHROMAT_FILE:
MSMg01no237_n13.b1 PHD_FILE: MSMg01no237_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:46 2005
(472 letters)
>mm_chr5_123734045_123734916
Length = 872
Score = 895 bits (463), Expect = 0.0
Identities = 469/471 (99%)
Strand = Plus / Plus
Query: 1 ggtgtgcatcactgtgcccagcccctaaacgagacttttgaaaaactcatggacacacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgtgcatcactgtgcccagcccctaaacgagacttttgaaaaactcatggacacacat 260
Query: 61 catgtttaaaaattccatgttggtgaaacaaaagctatctctttctctcatgtgctacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtttaaaaattccatgttggtgaaacaaaagctatctctttctctcatgtgctacta 320
Query: 121 aaacctgtttcataccccccaatttcatacattaaatttaagaaaacatggcaagaggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacctgtttcataccccccaatttcatacattaaatttaagaaaacatggcaagaggct 380
Query: 181 actcttgcagaagaccagagttcagttcttcacatccacggggtagtttacaatcatcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcttgcagaagaccagagttcagttcttcacatccacggggtagtttacaatcatcta 440
Query: 241 taacttcatttctagcggatccagcaccgtcttctgaaggcaccaggcatacattggcac 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacttcatttctagtggatccagcaccgtcttctgaaggcaccaggcatacattggcac 500
Query: 301 acattcctatatgtaggcagaaactctcatgcgcataaccattgttcaaaatctaaaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acattcctatatgtaggcagaaactctcatgcgcataaccattgttcaaaatctaaaata 560
Query: 361 atttaaaaaaatagaactcagatagttttgttattttgcttgcacaataacagttacata 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attaaaaaaaatagaactcagatagttttgttattttgcttgcacaataacagttacata 620
Query: 421 ttctgtattggagtttttggtgtttgtttgtttgtttgtttgtttcgcatg 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctgtattggagtttttggtgtttgtttgtttgtttgtttgtttcgcatg 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_n13.g1 MSMg01no237_n13.g1 CHROMAT_FILE:
MSMg01no237_n13.g1 PHD_FILE: MSMg01no237_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:46 2005
(648 letters)
>mm_chr5_123829328_123830375
Length = 1048
Score = 644 bits (333), Expect = 0.0
Identities = 351/357 (98%), Gaps = 3/357 (0%)
Strand = Plus / Minus
Query: 1 acttggctgaggtttgacccccaagccaggctgcaaaacagaccacaacagggcaagaag 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 acttggctgaggtttga-ccccaagccaggctgcaaaacagaccacaacagggcaagaag 298
Query: 61 atgacatttaaaaaaagaaaccctctcaacaccagagatcttcacgtggccgcaaagctc 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 297 atgacatttaaaaaaagaaaccctcttaacaccagagatcttcacgtggccgcaaagctc 238
Query: 121 ggcctca-gggtcgcaggaagcaggaagttcttggttttg-ttttttcttgagacaagat 178
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 237 ggcctcaggggtcgcaggaagcaggaagttcttggttttgtttttttcttgagacaagat 178
Query: 179 ctcctacaagtcaggctggcctccagctcttagtgtagctgaggacgactataaattcct 238
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ctcctacaagccaggctggcctccagctcttagtgtagctgaggacgactataaattcct 118
Query: 239 gattctcctgcctcagctttctcccactgttgggttttacagacatatcccactactctc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 gattctcctgcctcagctttctcccactgttgggttttacagacatatcccactactctc 58
Query: 299 agcttgaatgttactgttctttcaacaacacagtgtttcaataagaaaatgaggttt 355
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 agcttgaatgttactattctttcaacaacacagtgtttcaataagaaaatgaggttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
