BAC Information

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BAC

Clone NameMSMg01-237N24
Chromosome5 (Build37)
Map Location 102,005,675 - 102,005,953
singlet/doubletsinglet
Overlap genenone
Upstream geneCoq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2, LOC100040920
Downstream geneNkx6-1, Cds1, Wdfy3, EG666515, EG666527, LOC625780, Arhgap24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237N24.T7 (MSMg01no237_n24.b1)MSMg01-237N24.TJ (MSMg01no237_n24.g1)
ACCAG402697AG402698
length699975
length of high quality
(start - end)
279 (382 - 660)---
definitionCHROMAT_FILE: MSMg01no237_n24.b1 PHD_FILE: MSMg01no237_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:48 2005CHROMAT_FILE: MSMg01no237_n24.g1 PHD_FILE: MSMg01no237_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAAAAGTCTACGACCTGG
AAGGAACAAACATAATTAGGTACCCAGATCCACCTTACTAAACTAAATAT
GAATAATTCTCGATTAAGAATTTTGCTGTTGAAAGAGTGCGTTTGCTCTT
TAATGACAGGATTTAATTTACGCATTAAACAACATGTTTTCTTTACTGAT
CTGAAGTAGTGAAATTGCCTTCTTCCTTGTGAAATTTATTGCCATTTAAA
CATGCCAAAAGGCCTTTCTGACAGTCATTACAATAATCTATCATTTCTGC
AACTGCCAGGATTCTGTTCTGCGCCCCCACTCAATCGGAGCAGGGTCAAC
AGACTTCCCCACCAAATGCTTCCCTCTTGATTACCATCAATTTACTTTTG
TCCACAAAAAGGGCATCGCTGCAGAATGAAATGGAAGATTCCCCTAAGAC
CTCTGGCAAACACAGTTTCTGGCTCCAACCGAGGTGTCACTTTGGCCCTT
GGTTCTGCTTTTGTGCTTTTGGCTGCAAACTCAGTTGGGACACCTCTTGG
ACAGGCTTAGGTATATGAAGGGGACAGGGTACTGCTACCTGTCGGTTTCT
TCTTCGAAGCAGTCCAGGTGGGGGGAGGCATCGGGTTTCCAGTTTCCAG
TCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTC
CGCGGGAATTCTNTTGCAAGTCGCGTGGTGTGGTGTGGTGTGTGGTGTGG
TGTGTGGTGTGTGGTGTGGGTGTGTGTGTGTAGTTTTCCACATCAAACAA
NAANTATATAATTATATTNTTATANATCTTGTTTTATAAACATATTATTT
TTTAGAAATATTCAAATTTACATATATTACAAAAGCTACTATAAGTACTA
TTAATACGGCGTCTGATATATCGAGGTCTAGGCTGCGTTAGGCTATTATT
TAGAGACACATGATGATACAAGAAGCATACAGATTAATTCTGAATAAATT
AAAGAATAGACAAGCAGAGAAAATCGATTTTTTTTTTTTCTATACAATAA
CAGAAATTGAGCGCGCGGCGAACGAAGAGTTTTTGAGTAAAGTTTCCCCC
AAAAACAAGGACCCCCCAGGTTATATTTGTTAATATGAGGTATTTGGTGG
TATGTTNTTGTTGTCCCCCCCAAAATAAAAATAAAAAAAAAATATCTGTG
TGGGTGGGGGGGGGGGCGGAGTAACAATAAATCTTTACTCAACAACTTGT
ATCGTCTACGAGATATNGTAAATTCAATGATCATATATATTTTCGTCATG
CTTCTCGTATTCTTAGGTATAAAGATTCTGACTGTGCGTTTGTATACTGA
TGAGAGAAAAGAAAGAGTTTCGTGATATATTTATTCTTTACCACACACTA
GTCACTGTTCATATCTATATTTACTACTTAGACGCAAATAATCACAACGC
TAATTATCAACGGATCACAGAAAATAGATATGTAGATACTGGTGAAATAT
ATATGTTGTCGTGGAGATTCGACGACATATATAACCACCGAAAACCGCTT
GTATACACACAACTTACATAGCCTTTTAACCCAGCTAATTTAAGACCTCT
GCGTACCATATAACGGAGTAAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_n24.b1 MSMg01no237_n24.b1 CHROMAT_FILE:
MSMg01no237_n24.b1 PHD_FILE: MSMg01no237_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:48 2005
         (279 letters)



>mm_chr5_102005475_102006153
          Length = 679

 Score =  532 bits (275), Expect = e-155
 Identities = 278/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatcggagcagggtcaacagacttccccaccaaatgcttccctcttgattaccatcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 caatcggagcagggtcaacagacttccccaccaaatgcttccctcttgattaccatcaat 420

                                                                       
Query: 61  ttacttttgtccacaaaaagggcatcgctgcagaatgaaatggaagattcccctaagacc 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttacttttgtctacaaaaagggcatcgctgcagaatgaaatggaagattcccctaagacc 360

                                                                       
Query: 121 tctggcaaacacagtttctggctccaaccgaggtgtcactttggcccttggttctgcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tctggcaaacacagtttctggctccaaccgaggtgtcactttggcccttggttctgcttt 300

                                                                       
Query: 181 tgtgcttttggctgcaaactcagttgggacacctcttggacaggcttaggtatatgaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgtgcttttggctgcaaactcagttgggacacctcttggacaggcttaggtatatgaagg 240

                                                  
Query: 241 ggacagggtactgctacctgtcggtttcttcttcgaagc 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ggacagggtactgctacctgtcggtttcttcttcgaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)