Query= MSMg01no260_p05.b1 MSMg01no260_p05.b1 CHROMAT_FILE:
MSMg01no260_p05.b1 PHD_FILE: MSMg01no260_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:13 2005
(326 letters)
>mm_chr5_122998290_122999018
Length = 729
Score = 561 bits (290), Expect = e-164
Identities = 315/324 (97%), Gaps = 3/324 (0%)
Strand = Plus / Minus
Query: 6 gaattcaaggtctctctttgcagcgctggggagcaagctagaagacctcagaacactgga 65
|||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 529 gaattcaaggtcacactttgcagtgctggggagcaagctagaagacctcagaacactgga 470
Query: 66 gagtgaagggaaaggacccagagactgtgaaccggctagctttccctcaggctgctgctg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gagtgaagggaaaggacccagagactgtgaaccggctagctttccctcaggctgctgctg 410
Query: 126 gctgctgccttgc--tttaattcagcaggcagcaattctaaaacaagccattgagtcaca 183
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gctgctgccttgctttttaattcagcaggcagcaattctaaaacaagccattgagtcaca 350
Query: 184 cttgtttttaattgatgtttgtcattctgctgaattcttatcatgcatgacatttatac- 242
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 349 cttgtttttaattgatgtttgtcattctgctgaattcttagcatgcatgacatttatact 290
Query: 243 ttttttttggaaaattttaaggtctatgcactttccttgtgtatttcttaagtttttaat 302
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 289 ttttttttggaaaattttaaggtctatgcactttccaagtgtatttcttaagtttttaat 230
Query: 303 gctaagatgataacaagcattttt 326
||||||||||||||||||||||||
Sbjct: 229 gctaagatgataacaagcattttt 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 729
Length adjustment: 9
Effective length of query: 317
Effective length of database: 720
Effective search space: 228240
Effective search space used: 228240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_p05.g1 MSMg01no260_p05.g1 CHROMAT_FILE:
MSMg01no260_p05.g1 PHD_FILE: MSMg01no260_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:13 2005
(504 letters)
>mm_chr5_122803681_122804588
Length = 908
Score = 936 bits (484), Expect = 0.0
Identities = 501/508 (98%), Gaps = 4/508 (0%)
Strand = Plus / Plus
Query: 1 tctccacatcagccctccttaatccgagtttaaggcccaatggcacaattcttttctcgg 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccacatcagccctcctcaatccgagtttaaggcccaatggcacaattcttttctcgg 260
Query: 61 tcaccgaattaaaccctggacataaatcaaatggaacggggctggcatgctcttcgaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaccgaattaaaccctggacataaatcaaatggaacggggctggcatgctcttcgaagc 320
Query: 121 ccagcatggccctcgcgaggcgcgctatggcagcttcagtcgtggcgaagaatggcggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagcatggccctcgcgaggcgcgctatggcagcttcagtcgtggcgaagaatggcggag 380
Query: 181 gaggccgaagaagacgatggataaaccctgcacgaggcgttagacttttccctcttctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggccgaagaagacgatggataaaccctgcacgaggcgttagacttttccctcttctaa 440
Query: 241 gtagcaaagcaagaatggccgctccacctttcacctggccgcccgtcatcccgcacttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagcaaagcaagaatggccgctccacctttcacctggccgcccgtcatcccgcacttca 500
Query: 301 gcatggctacgggcagagcaggcatggagggcgcaagcgcgccacccgcgggtgcccgga 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gcatggctacgggcagagcaggcatggagggcgcaagcgcgccagccgcgggtgcccgga 560
Query: 361 tgttgccc--gcactttccgcgagctcagcctttcccttgccccgcccacgagcgatttc 418
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 tgttgcccccgcactttccgcgagctcagcctttcctttgccccgcccacgagcgatttc 620
Query: 419 ttgcagcgccgggtttttttttttt--cccttgacgggaaatgacccttacgggcccccg 476
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 ttgcagcgccgggttttttttttttttcccttgacgggaaatgacccttacgggcccccg 680
Query: 477 taagacaggctcttgccaacttcgcgtc 504
||||||||||||||||||||||||||||
Sbjct: 681 taagacaggctcttgccaacttcgcgtc 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 908
Length adjustment: 10
Effective length of query: 494
Effective length of database: 898
Effective search space: 443612
Effective search space used: 443612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
