BAC Information

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BAC

Clone NameMSMg01-260P22
Chromosome5 (Build37)
Map Location 119,837,469 - 119,837,642
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665162, Thrap2, LOC100039488, EG665194
Downstream geneLOC100039529, LOC100039542, Tbx3, EG433945, Tbx5, Rbm19, LOC100039609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260P22.T7 (MSMg01no260_p22.b1)MSMg01-260P22.TJ (MSMg01no260_p22.g1)
ACCAG403507AG403508
length757861
length of high quality
(start - end)
360 (53 - 412)180 (76 - 255)
definitionCHROMAT_FILE: MSMg01no260_p22.b1 PHD_FILE: MSMg01no260_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:16 2005CHROMAT_FILE: MSMg01no260_p22.g1 PHD_FILE: MSMg01no260_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
NAATTCCAACACTGTCCCTTGTGCGAGTAGGATTTGCATGTGACATTTCT
GATGTTTGTTTCCTTGACTTTCCATAACAGGGAGGCCTGACNGATCACAC
CAGCCAACAGAACTCCTGTCCAGGGAAGCTGGGATCAGTTCTTAAAGACT
GACCAGCACTGGNTGTCTGAGGAACAATCAGGAGCANGAGCGCTGGTGAT
AGATTAGTGATGTCTGCGGCACTGGTGATAGATTAATGATGTCTGCTGCA
NACATGGTTTGAAAGAATGGNCAGGCATCTACATTCCAGGTTCCATTCCT
GAATGGCTTCTGATTCTGGACTTCCTCCCTGGATGTGTGGTTGTGTGGTT
CACATATGTAGACCTGAAACACGCCCCCCTGTGTGTGTGTCCCTGACATT
TGTTAGTTTTTGTTTTTGTTTTTCNAAACANNTTTTCTCTGTNTNCTCTT
GTTTGTTCTGGAACTCTCTTTTTTNNACCCTTTTTTTCTCTAACCCGGAA
CTGCGCGGGGGGGCGGGGTACTNNTNNTTGTTTTTNTTTTTNTATTGTNT
TTTNCGTTTTTTNTTNCNTTTTTTTTNTTTTTATTATCCCTTTCTTTCTT
CTTCCCCCCTCCCTTTCTCATTGACAGGGGGGGGCGGGTGGTAAGTNTAG
GTAGTTTNTCNNCTTTTCTCCTTTCTTCTTCGTTAAGGCGGGGGGTGTGG
GGCGGGG
NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGCCCCAACCCTGCCCCCGCCACC
TGCCTTTCTCATTCCTCCATTTTGTCCTTACTTGTTTTCTTTGTTGTTTG
GTCTTAAGGGCTGGGGGGAGGGAGGGTGCATGCACGTGCTGTCTGCCTGT
CTCTGTGCGTGTATGTCTGTGTCTGTGTGTCTGTATGCGTGTCCGTGTGC
CTATGTATGTGCCTATGAATATGTGTCTGACGTTCTGTGCGCCTCAGTGT
TTTTGTCTGTCTCCGCACGACCCTTTTTTTTTTTTTCCACCGTCCTTCCT
CCCCTGCGACCATCTTTTTTTTTCTCCCCCCCCCCCCCCCCCTTCTTTTA
CTCTCTTCATCTTATTTTCCTCTCTACCCCCCCCCCCCCCTCTTTACAAA
TAACTTATTTTTTTGTGTTTCAACCATCATCTCCCCTACCATCTCCTCCT
CTATACCTGCCCCTTTCCTTCCCTTTCTCCTTGTACACCTATATCTTCTA
TCCTCTTTTTCCTCTTCTCCCTTATTTCTCCTCTTTACTGTCATTCTCCT
CATCTGCTCCCTCTACTCAGCTCCGCTATAGCCTCTTTCTACTTCTCTCT
TATTTCTCTCACATTTCTTCTCCACTCTCATTCTCCTCCTTCTCTCCTCC
CCTATACTCCTCTCTCCTCTATTTCTTCTCTCGCCACCCACTCAATCGCC
CACGTGTCTCTTTTCTCCCTATCGTTTCTCCCCCTCCCTTCCCTTCCGCT
TCTCTCTCTTAATCATCTTCCCTTTCCTCCTTCCCCATCCCTCTTTTCTT
TCCATCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_p22.g1 MSMg01no260_p22.g1 CHROMAT_FILE:
MSMg01no260_p22.g1 PHD_FILE: MSMg01no260_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:16 2005
         (180 letters)



>mm_chr5_119837269_119837848
          Length = 580

 Score =  275 bits (142), Expect = 1e-78
 Identities = 168/180 (93%), Gaps = 6/180 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgccccaaccctgcccccgccacctgcctttctcattcctccattttgtccttacttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgccccaaccctgcccccgccacctgcctttctcattcctccattttgtccttacttgt 260

                                                                       
Query: 61  tttctttgttgtttggtcttaagggctggggggagggagggtgcatgcacgtgctgtctg 120
           ||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct: 261 tttctttgttgtttggtcttaggggctggggggagggagggtgcatgcacatgttgtctg 320

                                                                       
Query: 121 cctgtctctgtgcgtgtatgtctgtgtctgtgtgtctgtatgcgtgtccgtgtgcctatg 180
           |||||||||||| ||||||||||||||      ||||||||| ||||| |||||||||||
Sbjct: 321 cctgtctctgtgtgtgtatgtctgtgt------gtctgtatgtgtgtctgtgtgcctatg 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)