Query= MSMg01no261_b15.b1 MSMg01no261_b15.b1 CHROMAT_FILE:
MSMg01no261_b15.b1 PHD_FILE: MSMg01no261_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:24 2005
(319 letters)
>mm_chr5_124516678_124517388
Length = 711
Score = 526 bits (272), Expect = e-154
Identities = 298/310 (96%), Gaps = 8/310 (2%)
Strand = Plus / Minus
Query: 9 tcatcgtggagactggagagtactgtgactttgtgtctataagagcttaactagctgagg 68
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tcattgtggagactggagagtactgtgactttgtgtctataagagcttaactagctgagg 451
Query: 69 gagaggagactccagaccgatgtctgtgtctaagagaaagaggacagagctggtgttgag 128
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gagaggagacgccagaccgatgtctgtgtctaagagaaagaggacagagctggtgttgag 391
Query: 129 gtcaggcatcagctggccctgtgtcagtctggagtcagctcactgcttgggaaccctggc 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtcaggcatcagctggccctgtgtcagtctggagtcagctcactgcttgggaaccctggc 331
Query: 189 ctgactgcagccctccactggcagccttgctcatcactgctgtttccccatcaggcatcc 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctgactgcagccctccactggcagccttgctcatcactgctgtttccccatcaggcatcc 271
Query: 249 tctagcggccctaggaccagaaccgcttctgcttctgtgactataaagcttaaacacaag 308
||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 270 -ctagcggccctaggaccagaacc------acttctgtgactataaagcttaaacac-ac 219
Query: 309 cctacaacag 318
||||||||||
Sbjct: 218 cctacaacag 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 711
Length adjustment: 9
Effective length of query: 310
Effective length of database: 702
Effective search space: 217620
Effective search space used: 217620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_b15.g1 MSMg01no261_b15.g1 CHROMAT_FILE:
MSMg01no261_b15.g1 PHD_FILE: MSMg01no261_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:24 2005
(459 letters)
>mm_chr5_124366146_124367004
Length = 859
Score = 781 bits (404), Expect = 0.0
Identities = 451/474 (95%), Gaps = 16/474 (3%)
Strand = Plus / Plus
Query: 1 atagtagtcagatgatggaagcaaatgacctgaaagccaggaagtaatgctagagtggag 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 atagtagtcagatgatggaagcaaatgacctgaaagccaggacgtaatgctagagtggag 260
Query: 61 gaagaatggggaggtcgccgtgtaaggctttctctcagtcaagctctgtggacaagtcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagaatggggaggtcgccgtgtaaggctttctctcagtcaagctctgtggacaagtcag 320
Query: 121 gaaaataatgagggccgtgcttttgtaatgacaggaggtggcctcactgtgtgctttatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaataatgagggccgtgcttttgtaatgacaggaggtggcctcactgtgtgctttatg 380
Query: 181 actttgatctcacagttcttgacctggtcctctgagtgctgggctcacaggcatgtgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actttgatctcacagttcttgacctggtcctctgagtgctgggctcacaggcatgtgcct 440
Query: 241 gtgcacctggctgtcactcttccagggacccttctgct-tggtggagaaagaaactgctg 299
||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||
Sbjct: 441 gtgcacctggctgtcactcctccagggacccttctgctgtg-tggagaaagaaactgctg 499
Query: 300 ccccgaggggtcctgatctgggctggctggctggctggctggctttctttctttctttct 359
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 500 ccccgaggggtcctgatctgggctggctggctggctggctttctttctttctttctttct 559
Query: 360 ttctttctttctttctttctttctttctttctttctt---tc---------tttctttct 407
||||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct: 560 ttctttctttctttctttctttctttctttcttccttccttccttccttcctttctttct 619
Query: 408 tt--ctttctttctttctttcttttttttacatttatttattattatacataag 459
|| |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 620 ttttctttctttctttctttctttttttaatatttatttattattatacataag 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 104
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
