BAC Information

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BAC

Clone NameMSMg01-261B22
Chromosome5 (Build37)
Map Location 63,822,058 - 63,954,160
singlet/doubletdoublet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261B22.T7 (MSMg01no261_b22.b1)MSMg01-261B22.TJ (MSMg01no261_b22.g1)
ACCAG403595AG403596
length708712
length of high quality
(start - end)		634 (47 - 680)597 (80 - 676)
definitionCHROMAT_FILE: MSMg01no261_b22.b1 PHD_FILE: MSMg01no261_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:26 2005CHROMAT_FILE: MSMg01no261_b22.g1 PHD_FILE: MSMg01no261_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,953,690 - 63,954,160)(63,822,058 - 63,822,654)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTAGCAAGATTATCACTTATAAGTGTTATTAGATTCCTGATTCC
AGTGTGTGTCTTTGGCTCTTTTCCTTGGCTTATTTTGGTCTATCTTCTCA
TAGAAGGTATAGAAGGAAAAACTTAAGTTCCTAAGTATCTTACCTCATAT
CCTAACTGCTCCTGTTCTGGGATTAGCCTGTCAACCAGCTATCTCTTCTT
TCCCCTTTCCTATTTCTTTTCTACTCTCTCCCTCTCCCTCTCCCTCTCCC
TCTCTCTCTCTCTACTCTCTGTCTCTCCCTCTATTACCTCCTCTCTCCTT
CCTCCCCTCCCCTCCCCTCCACTCCCGTCCCCTCCCCTCTCCTTTCCTCT
CCTCTCTTCAGTCCAACATCATGGATGCATATGAGAAGTACTATTTTAAC
TGAAATAAGTCAGATCAGAAATTTTGATGGTTGATAGTCATTATTTATAA
CTTCACTTTTAACCAAACAATATCTTACCGTAACTCTTCTTTAAAATTTA
TTAAGTAAGTTAACTAAATATATAAACTGTAGGGAAAATTTGATGTTTCA
TGCATGTATTTTAATTGTAAGACATGTATTTGACTAATAGGAAAGAAACA
TATTTCACAAAGGATGAGATGCTCTGAGGGCAGACACTTATCAACATGGA
TATAAGAA

NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGTTTCAGTAAGAAGTT
TCCTAAGAAGTATGGCTTAGGGATTAGGCATGTAAGCTTCAAGGCTGGCA
GATCTGTTTACAGTGTAGGCCCACCATGTATTTGCTGTGTGAATATGGGA
ATGTTCACTCACCAGCTACAGCTTGGTTTTCTTTTATTAATTCAAAATGA
AAGTAAAATCCTATGTACTCCTCAACCACTCCTGTGACATTTAACTGAGA
TGGTTGACAAGAAGCAGAGCACGGCACGCTGCTGAGAGCAAACACTGACA
TTGCTATCCTTTGCTTTTTAATCTTAGATTTCCTCACTTGATGCTTAAGG
CACATACTTGGTGGGAAGCCACTTGTCATAAAAGTGAGGCCTTGATGCCA
TTCAAATACAGGAAAATCCTGAAATGAATCATCACATTGCAATCTCTCAT
TCGGCAGAAGTTTGTCATTCAATGAGTCCAAATCAAAGTTATAAAAATAA
CAAATACTAGAATGGCTTCCCTGAAAACTTAGCTTTCTTTGAAAGTCTGG
TCTTATATTGTTACCCAAACTGAGATCTCACCTCAGATCTTGTGACAGAG
AGGATCCCAGCCAGCCCTGCTTTTTAGCACTCAGAGGAAAATCTGTATCT
GTCGTTCCAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_b22.b1 MSMg01no261_b22.b1 CHROMAT_FILE:
MSMg01no261_b22.b1 PHD_FILE: MSMg01no261_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:26 2005
         (634 letters)



>mm_chr5_63953127_63954160
          Length = 1034

 Score =  911 bits (471), Expect = 0.0
 Identities = 471/471 (100%)
 Strand = Plus / Minus

                                                                        
Query: 164  tcctgttctgggattagcctgtcaaccagctatctcttctttcccctttcctatttcttt 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 tcctgttctgggattagcctgtcaaccagctatctcttctttcccctttcctatttcttt 975

                                                                        
Query: 224  tctactctctccctctccctctccctctccctctctctctctctactctctgtctctccc 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  tctactctctccctctccctctccctctccctctctctctctctactctctgtctctccc 915

                                                                        
Query: 284  tctattacctcctctctccttcctcccctcccctcccctccactcccgtcccctcccctc 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  tctattacctcctctctccttcctcccctcccctcccctccactcccgtcccctcccctc 855

                                                                        
Query: 344  tcctttcctctcctctcttcagtccaacatcatggatgcatatgagaagtactattttaa 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854  tcctttcctctcctctcttcagtccaacatcatggatgcatatgagaagtactattttaa 795

                                                                        
Query: 404  ctgaaataagtcagatcagaaattttgatggttgatagtcattatttataacttcacttt 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794  ctgaaataagtcagatcagaaattttgatggttgatagtcattatttataacttcacttt 735

                                                                        
Query: 464  taaccaaacaatatcttaccgtaactcttctttaaaatttattaagtaagttaactaaat 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734  taaccaaacaatatcttaccgtaactcttctttaaaatttattaagtaagttaactaaat 675

                                                                        
Query: 524  atataaactgtagggaaaatttgatgtttcatgcatgtattttaattgtaagacatgtat 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674  atataaactgtagggaaaatttgatgtttcatgcatgtattttaattgtaagacatgtat 615

                                                               
Query: 584  ttgactaataggaaagaaacatatttcacaaaggatgagatgctctgaggg 634
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614  ttgactaataggaaagaaacatatttcacaaaggatgagatgctctgaggg 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no261_b22.g1 MSMg01no261_b22.g1 CHROMAT_FILE:
MSMg01no261_b22.g1 PHD_FILE: MSMg01no261_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:26 2005
         (597 letters)



>mm_chr5_63821858_63822854
          Length = 997

 Score = 1147 bits (593), Expect = 0.0
 Identities = 596/597 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtgtttcagtaagaagtttcctaagaagtatggcttagggattaggcatgtaagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtgtttcagtaagaagtttcctaagaagtatggcttagggattaggcatgtaagctt 260

                                                                       
Query: 61  caaggctggcagatctgtttacagtgtaggcccaccatgtatttgctgtgtgaatatggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggctggcagatctgtttacagtgtaggcccaccatgtatttgctgtgtgaatatggg 320

                                                                       
Query: 121 aatgttcactcaccagctacagcttggttttcttttattaattcaaaatgaaagtaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgttcactcaccagctacagcttggttttcttttattaattcaaaatgaaagtaaaat 380

                                                                       
Query: 181 cctatgtactcctcaaccactcctgtgacatttaactgagatggttgacaagaagcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctatgtactcctcaaccactcctgtgacatttaactgagatggttgacaagaagcagag 440

                                                                       
Query: 241 cacggcacgctgctgagagcaaacactgacattgctatcctttgctttttaatcttagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacggcacgctgctgagagcaaacactgacattgctatcctttgctttttaatcttagat 500

                                                                       
Query: 301 ttcctcacttgatgcttaaggcacatacttggtgggaagccacttgtcataaaagtgagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcctcacttgatgcttaaggcacatacttggtgggaagccacttgtcataaaagtgagg 560

                                                                       
Query: 361 ccttgatgccattcaaatacaggaaaatcctgaaatgaatcatcacattgcaatctctca 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 ccttgatgccattcaaatacaggaaaatcctgaaatgaatcaccacattgcaatctctca 620

                                                                       
Query: 421 ttcggcagaagtttgtcattcaatgagtccaaatcaaagttataaaaataacaaatacta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcggcagaagtttgtcattcaatgagtccaaatcaaagttataaaaataacaaatacta 680

                                                                       
Query: 481 gaatggcttccctgaaaacttagctttctttgaaagtctggtcttatattgttacccaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaatggcttccctgaaaacttagctttctttgaaagtctggtcttatattgttacccaaa 740

                                                                    
Query: 541 ctgagatctcacctcagatcttgtgacagagaggatcccagccagccctgcttttta 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgagatctcacctcagatcttgtgacagagaggatcccagccagccctgcttttta 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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