BAC Information

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BAC

Clone NameMSMg01-261E16
Chromosome5 (Build37)
Map Location 149,282,420 - 149,282,756
singlet/doubletsinglet
Overlap genenone
Upstream genePan3, Flt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1
Downstream geneLOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261E16.T7 (MSMg01no261_e16.b1)MSMg01-261E16.TJ (MSMg01no261_e16.g1)
ACCAG403722AG403723
length734760
length of high quality
(start - end)
228 (46 - 273)344 (76 - 419)
definitionCHROMAT_FILE: MSMg01no261_e16.b1 PHD_FILE: MSMg01no261_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:39 2005CHROMAT_FILE: MSMg01no261_e16.g1 PHD_FILE: MSMg01no261_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCGTGGGGTTTTCGCTATAATAGGGATTGAACCTAGGGCTCTGAACA
TGCCAGGCAAGCATGTTACCATAAAAGCTCTTCCAACCCAGGGTTTCCTT
TCTCTTCTTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCT
TTTCTTTTCTTTTCTTTTCTTTTCTTTCCTTTCCTTTCCTTTCCTTTCCT
TTCCTTTCCTTTTGCCATAGGGTCTCACTAAGTTGCTTAGCTGGGCCTGG
GTTCTCTCTGAGACCAATCATGTCCTGACTTAATCTACACCAGAAAGGTC
GAACTGAATTATATGCCGAACTGAGCAGAGTGACTCATGTTATGCTACCT
AATTCTTGTAAAGATGAGCCCCGCCATGGCTAAGAGGTGGGGGTCTATAA
GAAGGCGTTGGACCACAAAGGCTCCCCCCGTCATGAATAGAACTCAGGAC
CCAATAAGAGAGGTTTCATCTAGATACTGATTTGCTTGAACTTTAGTGCT
CTGTTTCCTCAGGCCCGGAGGACTGGAGGACTAGGTTTCTAATCTCCATC
TTAGGAGGGGAGGACATCCCTCAACAGTTTCTAAACCTTTCCGCACCTAG
GGTATGGGTACCCCAGGCAATGCGAATGGAGTTCTGTTCTTTTCAGAGTC
GCGGCATGTGACCCCAATTACAAGTTTGTATTTG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCACAGATACACAGAGA
AACCCTGTCTTAAAAAACGAACAGAAAGAAAAAAAAAACAACAACAACAA
AATTAAATAAATTATAAAACAAAACCTCTAGGGATTGCACCCAGGCGAAG
TGCATGCCTTACCTCGCCAGGTCCCTATACCAGGAAATTAAGACATAAAG
CAATATCTGAAGCATCCTTATCCTGTGAGCTGCCTCTTCGGAGCTGAGTG
CCACTTACTAGGGTCCTTCACATGATTGCCTTTAGATGCTGATGGGTGCT
CTGGCACCGCTGCCATGCAAGGTAGATAGATGAGGAGAGCTAGGGAAGGT
GGGTAGAGAGGAGTGCTACCCCCCATCCTTGACTGATTATGATTCGTGAC
TAACTTGGTCCTCATGACGTATCCACATGTGCGTGTATGTCTCGTTAAAC
ATGTTCGTTTTTTATCACTTTACTTACTCCTATTCTCCTCCTTACTTTTC
ACTTCTCTTTCCTCCCCTTCCCCCTCCTTTTCCCCACCTTTCCTCCACTT
TCCTCCAATTACCTTAAATTTTCTGTCCCCTCTACCTATTTACCCATCCG
CATCTTCTTCTTCTATCTCTCCTCCACTTCTCAATCTCTTTAATATCTTT
TTCTTCATTCTTCCTCTCTCTCCTCTTCCTCTTATCACAAACCTGTTCCT
GATATTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_e16.g1 MSMg01no261_e16.g1 CHROMAT_FILE:
MSMg01no261_e16.g1 PHD_FILE: MSMg01no261_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:39 2005
         (344 letters)



>mm_chr5_149282218_149282961
          Length = 744

 Score =  513 bits (265), Expect = e-150
 Identities = 317/353 (89%), Gaps = 30/353 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccacagatacacagagaaaccctgtcttaaaaaacgaacagaaagaaaaaaa 60
           |||||||||||  ||||||||||||||||||||||  |||||| ||||||||||||||||
Sbjct: 203 caggacagccagggatacacagagaaaccctgtctcgaaaaacaaacagaaagaaaaaaa 262

                                                                       
Query: 61  aaacaacaacaacaaaattaaataaattataaaacaaaacctctagggattgcacccagg 120
           |                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 a----------------ttaaataaattataaaacaaaacctctagggattgcacccagg 306

                                                                       
Query: 121 --------------cgaagtgcatgccttacctcgccaggtccctataccaggaaattaa 166
                         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atattgggtgcatgcgaagtgcatgccttacctcgccaggtccctataccaggaaattaa 366

                                                                       
Query: 167 gacataaagcaatatctgaagcatccttatcctgtgagctgcctcttcggagctgagtgc 226
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 367 gacataaagcaatatctgaagcatccttatcctgcgagctgcctcttcggagctgagtgc 426

                                                                       
Query: 227 cacttactagggtccttcacatgattgcctttagatgctgatgggtgctctggcaccgct 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cacttactagggtccttcacatgattgcctttagatgctgatgggtgctctggcaccgct 486

                                                                
Query: 287 gccatgcaaggtagatagatgaggagagctagggaaggtgggtagagaggagt 339
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gccatgcaaggtagatagatgaggagagctagggaaggtgggtagagaggagt 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)