BAC Information

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BAC

Clone NameMSMg01-261G03
Chromosome5 (Build37)
Map Location 149,629,071 - 149,629,580
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik
Downstream geneLOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261G03.T7 (MSMg01no261_g03.b1)MSMg01-261G03.TJ (MSMg01no261_g03.g1)
ACCAG403787AG403788
length825737
length of high quality
(start - end)
---510 (73 - 582)
definitionCHROMAT_FILE: MSMg01no261_g03.b1 PHD_FILE: MSMg01no261_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:45 2005CHROMAT_FILE: MSMg01no261_g03.g1 PHD_FILE: MSMg01no261_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGAAAACGCTATACGACTACAAGTTTTCAAAAATCCGAGGAATTGT
TTCCTTCTTTCAAAAAATTCTTGAACCTAGGAGATAGCCCTTATACCTGA
AATATGGCGTATTGTGAATCTAGATACCCATGTGTGGATCGAAAATGGTT
AGAAAAGGATAAGAGCCGTGACGTCTGGGTGGTTCCTGTTGCCTTTCTTT
ATATCTGCACACACTTCATGGAAAGATTATAGGAGGGGGATGTACTGTGG
CAGTAGCCACGAGTCTGCACTAGGAGAGGAAGATTATCCAGTTTGAGGAG
ACGGTAGAAATAGCATGCTGCTGCATAAAAATGAATTGAATATGGANTGA
CCAGAAAGATGATGTCCGCATGTAACGTAACATACTGTGGAGAGATTTAT
CAATGCCGACTCGTCACCAGACAGATTGCCGGGAATGAAGTGGGTAAGAT
GCCTGTGTATATGAATGTTTTGACAGGATGTAATGAGACGAGAACTTTAG
ATGAAAATAAATAAATCAAGAGAAAANAAGTCCTNAGCCTTACCAAAGCA
AATCTGGCTTCACTATTCCCTAGATGGCACATATGTCTCCCAGAATCAAA
AACTTATACTTGGACATATTGTGTTTTCAACGGCTCGAACTATACCCGGT
TTAATGAAATACACCCTTTATTTGGTGGGAGAANCCCCCCCGTGCATTCT
ATTTAGCGCATACGCCCTTGCATTTTTAGCAGACCTCTGTGTTAACCAAT
TATATTACCGTGTATGTTTGACCCTTGATTCTGATCTCGCCGTTATGATC
CCTTTTGAGCCATTTATGTTAAAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGCCATGACTATGGACCAAGGTCTTC
TGTAGGTCGCCATGGCCACTCCACTTGATAGCGATAATTGTGGGACTCCC
CCAAGACAGCCATGTGGAGACGGCAGTTCCCCTCAATGGTACTGACTGAG
ACTTCTGAAACATCCGGGATACACAGACCATATTCACCTTCCCTGGTCGG
CAGGTCCCTGGACTATTTATCCGGAGTCCTTCTGAGAGTTCTTGAGAGGA
GCTGGGGAAATTTTGCTTGGCTGTGTGAGGTTAATTGGGGGAACAACCGT
TATCTGAAAGCAAGGTGGCTTTGTTGGGGAGACTATAATCTGAGAGGCGT
TTGTTATGTCAGAACAATCTTTATTGGGGTACTTAGGTGGGTTCTAAAAT
TGTAACATTTTAGGAATATGGATGATTGGGGAGGCACTTAGCAAGCGGTG
AGAGGGGCGTCTGTAACAGGCTTTGGAGATTGGTGTGCAAAGGCTGAGAG
AACTTGGCTTTTGTTCCCAAAGGGGGGACTTAGACGGTTAAGCAGTCAGG
GGGAGTGAGACGCTTGGCAATGGGTGACCTGGGGCGTTTACTGCTCGCCT
CTTAGGGCTTTGGACAGTAGTTGTTATAAAGTAGCGCCCGTTTTTTTCGC
AGTTTTCCCCGGAGTTGAGTAATATCGTCTTGTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_g03.g1 MSMg01no261_g03.g1 CHROMAT_FILE:
MSMg01no261_g03.g1 PHD_FILE: MSMg01no261_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:45 2005
         (510 letters)



>mm_chr5_149628871_149629780
          Length = 910

 Score =  948 bits (490), Expect = 0.0
 Identities = 505/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgccatgactatggaccaaggtcttctgtaggtcgccatggccactccacttgatagc 60
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 attgctatgactatggaccaaggtcttctgtaggtcgccatggccactccacttgatatc 260

                                                                       
Query: 61  gataattgtgggactcccccaagacagccatgtggagacggcagttcccctcaatggtac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gataattgtgggactcccccaagacagccatgtggagacggcagttcccctcaacggtac 320

                                                                       
Query: 121 tgactgagacttctgaaacatccgggatacacagaccatattcaccttccctggtcggca 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaccgagacttctgaaacatccgggatacacagaccatattcaccttccctggtcggca 380

                                                                       
Query: 181 ggtccctggactatttatccggagtccttctgagagttcttgagaggagctggggaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtccctggactatttatccggagtccttctgagagttcttgagaggagctggggaaatt 440

                                                                       
Query: 241 ttgcttggctgtgtgaggttaattgggggaacaaccgttatctgaaagcaaggtggcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcttggctgtgtgaggttaattgggggaacaaccgttatctgaaagcaaggtggcttt 500

                                                                       
Query: 301 gttggggagactataatctgagaggcgtttgttatgtcagaacaatctttattggggtac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 gttggggagactataatctgagaggcgtttgttatgtcagaacaatctttattggggtgc 560

                                                                       
Query: 361 ttaggtgggttctaaaattgtaacattttaggaatatggatgattggggaggcacttagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaggtgggttctaaaattgtaacattttaggaatatggatgattggggaggcacttagc 620

                                                                       
Query: 421 aagcggtgagaggggcgtctgtaacaggctttggagattggtgtgcaaaggctgagagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcggtgagaggggcgtctgtaacaggctttggagattggtgtgcaaaggctgagagaa 680

                                         
Query: 481 cttggcttttgttcccaaaggggggactta 510
           ||||||||||||||||||||||||||||||
Sbjct: 681 cttggcttttgttcccaaaggggggactta 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)