Query= MSMg01no261_k16.b1 MSMg01no261_k16.b1 CHROMAT_FILE:
MSMg01no261_k16.b1 PHD_FILE: MSMg01no261_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:06 2005
(662 letters)
>mm_chr5_81423857_81424918
Length = 1062
Score = 1164 bits (602), Expect = 0.0
Identities = 644/660 (97%), Gaps = 5/660 (0%)
Strand = Plus / Plus
Query: 6 gaattctcttctattac---cacatgttaatgccaaatgtgcagccattggttataccaa 62
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttctat--caaacacatgttaatgccaaatgtgcagccattggttataccaa 262
Query: 63 attataagtgacattattgtatcaccaggctggccactgttgtccactacagggtgaagc 122
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 263 attataagtgacattattgtatcaccaggctggccactgttgtccattacagggtgaagc 322
Query: 123 aaattgttgggattaatgactacttttctctcttggcagcttgcagatcaccttttaata 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaattgttgggattaatgactacttttctctcttggcagcttgcagatcaccttttaata 382
Query: 183 gagttagagatagccctagaggaggagccttctaggtccgtaccagtccactcttccagt 242
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 gagttagagatagccctagaggaagagccttctaggtccgtaccagtccactcttccagt 442
Query: 243 tcttttctttgacaattctcttggtttcctccaaaactttaactttaaccaagggcagtg 302
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcttttctttgacaattcccttggtttcctccaaaactttaactttaaccaagggcagtg 502
Query: 303 gcaatagcttaggtttttggggaagtatttattggacacttctgaccctattgagcaact 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcaatagcttaggtttttggggaagtatttattggacacttctgaccctattgagcaact 562
Query: 363 taaaaagagtttttccttgactggtactgaggttttgttaaatagtctatgaatccttag 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 563 taaaaagagtttttccttgactggtactgaggttttgttaaatagtctatgaatccttgg 622
Query: 423 acatcatcacttcatttttcataactccatttacaaatatataaatatatacatatatat 482
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 623 acatcatcacctcatttttcataactccatttacaaatatataaatatatgcatatatat 682
Query: 483 gtaatgcatgtctataaattatatgtgtattttatgtcaccttataaaatagtatggctc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtaatgcatgtctataaattatatgtgtattttatgtcaccttataaaatagtatggctc 742
Query: 543 cctatggctgcaccaaacatctttagggttgtctctgcttcctctgtctccatttatatt 602
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 743 cctatggctttaccaaacatctttagtgttgtctctgcttcctctgtctccatttatatt 802
Query: 603 acaagttaagtgctcacccagtataccccaattcttctatcacagcacctgtgccctgct 662
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 803 acaagttaagtgctcacccagtgtaccccatttcttctatcacagcacctgtgccctgct 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_k16.g1 MSMg01no261_k16.g1 CHROMAT_FILE:
MSMg01no261_k16.g1 PHD_FILE: MSMg01no261_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:06 2005
(564 letters)
>mm_chr5_81585326_81586289
Length = 964
Score = 1044 bits (540), Expect = 0.0
Identities = 558/564 (98%)
Strand = Plus / Minus
Query: 1 tcatgagatcatttaaatatccatttacactgatccctgtataaagagggagcacacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 764 tcatgagatcatttaaatatccatttacactgatccctgtataaagagggagcacgcagt 705
Query: 61 tcatttccatctgagctcaaggcttcaacagacataaaagaagaactgaaaggggggagc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 704 tcatttccatctgagctcaaggcttcaacagacataaaagaagaactgaaagggggaagc 645
Query: 121 atcttgaccttcacagactccaacaagcatccaggtaagcagtgaccaaaaaacaaaaac 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 644 atcttgaccttcacagactccaacaagcatcgaggtaagcagtgaccaaaaaacaaaaac 585
Query: 181 agaagcctctaaaagggttgcagcagccctatgttgttgtgttttcttcctcttttctga 240
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 584 agacgcctctaaaagggttgcagcatccctatgttgttgtgttttcttcctcttttctga 525
Query: 241 agtactaggcaggatcttgcagagaaggcaaaacaaatctttgtaattctcacctgcctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agtactaggcaggatcttgcagagaaggcaaaacaaatctttgtaattctcacctgcctg 465
Query: 301 ccaccggactattttgtcagtcagctttattccaaagacacctcaattccactccccacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ccaccggactattttgtcagtcagctttattccaaagacacctcaattccactccccacc 405
Query: 361 ccccaaaaggagaaaaatcagagcagccaaaggaggtgatcaacaagaagccagagacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ccccaaaaggagaaaaatcagagcagccaaaggaggtgatcaacaagaagccagagacac 345
Query: 421 aaagtccctggaggagagagaacagaaatgagagctgtgcagaaccagaaccgaggtgga 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aaagtcactggaggagagagaacagaaatgagagctgtgcagaaccagaaccgaggtgga 285
Query: 481 caaaactggaggatcttgcagtgatcagatgggcacttcagcagcacttgccaagaataa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 caaaactggaggatcttgcagtgatcagatgggcacttcagcagcacttgccaagaataa 225
Query: 541 ccaataaagcaacctgccaggcag 564
||||||||||||||||||||||||
Sbjct: 224 ccaataaagcaacctgccaggcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
