BAC Information

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BAC

Clone NameMSMg01-261N13
Chromosome5 (Build37)
Map Location 78,249,751 - 78,250,162
singlet/doubletsinglet
Overlap genenone
Upstream geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261N13.T7 (MSMg01no261_n13.b1)MSMg01-261N13.TJ (MSMg01no261_n13.g1)
ACCAG404113AG404114
length712758
length of high quality
(start - end)
412 (74 - 485)427 (74 - 500)
definitionCHROMAT_FILE: MSMg01no261_n13.b1 PHD_FILE: MSMg01no261_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:20 2005CHROMAT_FILE: MSMg01no261_n13.g1 PHD_FILE: MSMg01no261_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGGGTTCCCTCATGGGAGGAAGACAAAGCACACTAACTTG
GCCCTTTGTTATTAATGACAGGGTATTAATGCACAAGACTCATCTCTTCA
TCCTCAAAGGATCATGTCAACCATTAAACTACAATAGCAGTGGGGTGTTT
CCTAATAAAGTCATGGATATCTCATTCATCATCATCAAGCACAAAAATAA
AACCCTGGTTGAGTAACTGAAAGGATAACAAACTAGCAGCTGGGAGAAAT
ACTGAGGATCTCATTGCTCAGGGCTTCAAGTTCTTCATCCATCAAACAAG
GGGATTAAGTGGGATCCAACTTTCTTTGTGGCTGTAAGACTCAATGATTT
GTTCAAGGTATCATCCAAGATGCTAAAAATGTTCAAGAAATGCTGCCATT
TCAATATCCTTTACGAGTTCAATAAAGGAAGGAATAGCTGTAGAAAGGAG
AAACAAAAGTAAAATCTACAAGACAGCACGTGGCACTTCAAGCCTCTCCC
TGGTTCATACCTTGGATATGATAGAAGTAAAGATGACAAGAGAGTTAACA
GCCCCGCCCTGTAAGAGGACTTTCAAAGGAAGAGAGAATTTCTAAGAATG
TGAACGATAGATGACCCGTTTAGGAACTTAATATCCACGCTAGGTATTGA
AAGATGTTTAGA
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACATTTTTGATGGATATATTTCATTG
TAACTTCAGTCCTGTGATTCTCTTTTCCATCTCTTGTATTTTATAGGGGA
TGCTTACATCTGTAGTTCCTGTTTTCTTACCTAGACATTCCATTTCCAGA
ATTTCTCCATTTTGTGTCTTCCTAAGTTCAATGTCTTCAAATGCTTATAA
GTACTATGTTTTAAAGAGGACACCAGGTGTTTTTCCTACATGATTTATGG
TCATATGGGGTTCTCTCAGTGGTGTGATGAGGTTCCATGTTCCAGTGCAG
GCAGAGGTGGCAGGGAATGGTTCCACTCTTGTCTTTCTGAATTCTAAGAT
TCATAGGATCTGAGTTCACCCAGCTTTATGAGTTCTTTTCTCTGTTGGCA
AGCTCCTTTTACCCAAGAGTGATGGTGGTCGGATGTGTGTGTGTGTGTGT
GCGTGTGTATCTCTCTCTCCTTCTATTTCTTTTTCTCTTTCGCTTGTTTT
TCTCCACTCTTTTTATTCCCTAGTTACTCTTCCTCTTTCTTTCTACTATT
ATATTTCATACACTTCATATTTTAAATCCTACATTCAACATTTCATTTTA
TATATCATTCCCTTTTACCTCCTTTACTCCTTTTCCTTTTTCATTCTCCT
TCTCTCATTCCCCATATTTTTCCGCCTCCCTTTCTCTTTTCATTTATTTT
CTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_n13.b1 MSMg01no261_n13.b1 CHROMAT_FILE:
MSMg01no261_n13.b1 PHD_FILE: MSMg01no261_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:20 2005
         (412 letters)



>mm_chr5_78249551_78250362
          Length = 812

 Score =  774 bits (400), Expect = 0.0
 Identities = 409/412 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggaggaagacaaagcacactaacttggccctttgttattaatgacagggtattaatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggaggaagacaaagcacactaacttggccctttgttattaatgacagggtattaatgca 553

                                                                       
Query: 61  caagactcatctcttcatcctcaaaggatcatgtcaaccattaaactacaatagcagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 caagactcatctcttcatcctcaaaggatcatgtcaaccattaaactacaatagcagtgg 493

                                                                       
Query: 121 ggtgtttcctaataaagtcatggatatctcattcatcatcatcaagcacaaaaataaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggtgtttcctaataaagtcatggatatctcattcatcatcatcaagcacaaaaataaaac 433

                                                                       
Query: 181 cctggttgagtaactgaaaggataacaaactagcagctgggagaaatactgaggatctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cctggttgagtaactgaaaggataacaaactagcagctgggagaaatactgaggatctca 373

                                                                       
Query: 241 ttgctcagggcttcaagttcttcatccatcaaacaaggggattaagtgggatccaacttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttgctcagggcttcaagttcttcatccatcaaacaaggggattaagtgggatccaacttt 313

                                                                       
Query: 301 ctttgtggctgtaagactcaatgatttgttcaaggtatcatccaagatgctaaaaatgtt 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 312 ctttgtggctgtaagactcaatgatttgttcaagggatcatccaagatgctaaaaatgtt 253

                                                               
Query: 361 caagaaatgctgccatttcaatatcctttacgagttcaataaaggaaggaat 412
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 252 caagaaatgctgctatttcaatatcctttaggagttcaataaaggaaggaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)