Query= MSMg01no261_o23.b1 MSMg01no261_o23.b1 CHROMAT_FILE:
MSMg01no261_o23.b1 PHD_FILE: MSMg01no261_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:26 2005
(344 letters)
>mm_chr5_75705893_75706640
Length = 748
Score = 617 bits (319), Expect = 0.0
Identities = 335/343 (97%), Gaps = 4/343 (1%)
Strand = Plus / Minus
Query: 6 gaattcaataatcagtgtctatcttcccaccaataaagatttatttatttatttttcaat 65
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gaattcaataatcagtgtttatcttcccaccaataaagatttatttatttatttttcaat 489
Query: 66 ttgctcaaaaataaattcagattgggttgggcaaagaaagactt----taaaaaaaaaac 121
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 488 ttgctcaaaaataaattcagattgggttgggcaaagaaagacttaaaaaaaaaaaaaaac 429
Query: 122 aaagacgaaacacaaagagtaaaaacaaaactttttgatatatttgatgattaaagttaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaagacgaaacacaaagagtaaaaacaaaactttttgatatatttgatgattaaagttaa 369
Query: 182 gaacttgtctttcaaaagactggaggaaaggctataaaataatatacaaaccagaataag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaacttgtctttcaaaagactggaggaaaggctataaaataatatacaaaccagaataag 309
Query: 242 ttacttaacctttaggttactggtatccatatanaaatattttaaaccttttcaaactga 301
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 308 ttacttaacctttaggttactggtatccatatataaatattttaaaccttttcaaactga 249
Query: 302 atgagaaaacggnaacctaatgaaagataatatagtcgtaata 344
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 248 atgagaaaacggtaacctaatgaaagataatatagtcgtaata 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 748
Length adjustment: 9
Effective length of query: 335
Effective length of database: 739
Effective search space: 247565
Effective search space used: 247565
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_o23.g1 MSMg01no261_o23.g1 CHROMAT_FILE:
MSMg01no261_o23.g1 PHD_FILE: MSMg01no261_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:26 2005
(556 letters)
>mm_chr5_75552439_75553394
Length = 956
Score = 1060 bits (548), Expect = 0.0
Identities = 554/556 (99%)
Strand = Plus / Plus
Query: 1 cggatccagggagatcttgggggacagtagccggcgtgtgcgctccaggccggctcaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cggatccagggagatcttgggggacagtagccggcgtgtgcgctccaggccggctcaagc 260
Query: 61 ttccttggcctgttgctgtcttagaccccgcgttaccgagcaatgggaatagtcctttct 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ttccttggcctgttgctgtcttagaccccgcgttaccgagcaatggaaatagtcctttct 320
Query: 121 aaccaaccgggctgcagggaccccgcggggggcgggtttacgagcagcgagaacagagtg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaactgggctgcagggaccccgcggggggcgggtttacgagcagcgagaacagagtg 380
Query: 181 gcagggaaaggcgtcgtggtctctcttggcagggtctaggtagccttcatgcttggagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagggaaaggcgtcgtggtctctcttggcagggtctaggtagccttcatgcttggagag 440
Query: 241 gtggaaagtcaaagggtgttgtttcccctaaacccaagtgaccagttctgcaacatcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggaaagtcaaagggtgttgtttcccctaaacccaagtgaccagttctgcaacatcttt 500
Query: 301 gagacctggtccacagcgctatcttcctggctctcaaggcacggctgtgtcttggtccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagacctggtccacagcgctatcttcctggctctcaaggcacggctgtgtcttggtccct 560
Query: 361 ctttgggcagtggtgatgataattatgctgatggtgacgatggcggtatgtttgttcctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttgggcagtggtgatgataattatgctgatggtgacgatggcggtatgtttgttcctc 620
Query: 421 agtgaagtctctggaggtccccaaagaaatttagcattttagataggagttttgtcattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgaagtctctggaggtccccaaagaaatttagcattttagataggagttttgtcattt 680
Query: 481 cttcttccacgcctaggagctcaactacaagtcatcacaagacctaaaagtaaagattaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttcttccacgcctaggagctcaactacaagtcatcacaagacctaaaagtaaagattaa 740
Query: 541 cctacgattttttttt 556
||||||||||||||||
Sbjct: 741 cctacgattttttttt 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
