BAC Information

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BAC

Clone NameMSMg01-262D09
Chromosome5 (Build37)
Map Location 138,268,919 - 138,269,476
singlet/doubletsinglet
Overlap genePilra
Upstream geneEmid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1
Downstream genePilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262D09.T7 (MSMg01no262_d09.b1)MSMg01-262D09.TJ (MSMg01no262_d09.g1)
ACCAG404379AG404380
length733726
length of high quality
(start - end)		560 (40 - 599)520 (77 - 596)
definitionCHROMAT_FILE: MSMg01no262_d09.b1 PHD_FILE: MSMg01no262_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:48 2005CHROMAT_FILE: MSMg01no262_d09.g1 PHD_FILE: MSMg01no262_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTCTAGTCCACTGGTGGTTGTTGTAACGTAGATGCTTTAAAAATTATACC
GTGATTTATTTTTACGTATTAATGTTTTGCCTGCTTGTGTGTCTGTTCCA
TTCATGTGCGCCTGGTCCCTGTGGCAGTCAGAGGAGGGGATCCTATCCCC
TGGAACAGGAGTTACAGGCAACTCTGAGCCACCGTGTGGGTGCTGGGAAG
CAAACCCAGGACCTCTGCAAGAGCAGCCAGTGCTCTTAACCACTGAGCCA
TCTCTCCAGCCCAGCATAGACACCCTAACTACTTTCCCCATTTTTATGAA
TGAGAGAGTTGTGTCCTAGTCTCTTCTTTTTTTGCTTTCCTTCAACAATG
TTACCCACAGTGTTTTGGAGAACAAGTTATCTGGCTCCTTGATTTTAGCC
TTTTATCTGAATGTTTTACTCTACTGTCTTAGGTTTACAGTTATATTTTT
ATTTGTGTGTATGTGTGATTGTGTGAGTGTGTATCACATGAGGTCCCACA
CCCAAGGAGGCCGGAAGAGACCACTAAACTCCTGAAGCTAGGCTTACAGG
TGGTTGCGAGCTGCCCCATGTGGGGTGCTGGGAACTGAATTGGGGCCTCT
GGGAGAATAGTAAATGTTCCTAACCACTAGGCAATCTCTCTGTGTTCTTT
CTTCTGATTTAACATAAATTGTTTTGTTGCTGT

CTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAAATTTATACAAGTAATTTTGA
GTCCTCTATAGTATGAAAGCTGCAATTAGAGATCTGTAAACCTTCATGTA
TTCCCTAATTGCACCAGGATAAGGAAGCAGACTTGGAACAAATTTGTGAA
CAGAGAAAACATTCCTTATAGGTCAACTGTGAAACCATTATCTGATAACT
AAAGACCATAAACTGGGAATGAGCAATTTATTGTAGGTGCAAGGACAAAA
TAAAATATTGGCTGGATTTATCTATACAAAACTTCAAAATGAGACACAAG
GCAGATGATTTGTCTTTTGACAAAACCTTGCTGAGTTGTATCATAATTAT
TGCTTTAAGCTTTTAATGAACCCACAGTTACAGATAGATAACGAGTGTTC
AATTAGGTACCAATCTAAATGGAAACACACGTAGACTTTTTTTGGTAACT
CTTTATTCAATTTATGATTTGAATTTATGTTTTAAACCTGCTTTGAACCT
TTGGAAAAAAGATGCTTGGAATACCAAGTGACCATTTATTTTGAGAAAGT
ATAAAAAACAAACAACATCAGTAGGAAAGAGTTCCCCTTTTTCTTTCTCT
TAGCAATAAAGATTCTAGTCTCTTTTCAAAATGAGTGGTTTTTTTTTTTC
ATGACTTTTTTTCTGGTTCACAGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_d09.b1 MSMg01no262_d09.b1 CHROMAT_FILE:
MSMg01no262_d09.b1 PHD_FILE: MSMg01no262_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:48 2005
         (560 letters)



>mm_chr5_138268717_138269676
          Length = 960

 Score = 1048 bits (542), Expect = 0.0
 Identities = 554/558 (99%), Gaps = 1/558 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttctagtccactggtggttgttgtaacgtagatgctttaaaaattataccgt 63
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctttcgagtccactggtggttgttgtaacgtagatgctttaaaaattataccgt 262

                                                                       
Query: 64  gatttatttttac-gtattaatgttttgcctgcttgtgtgtctgttccattcatgtgcgc 122
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 263 gatttatttttattgtattaatgttttgcctgcttgtgtgtctgttccattcatgtgtgc 322

                                                                       
Query: 123 ctggtccctgtggcagtcagaggaggggatcctatcccctggaacaggagttacaggcaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctggtccctgtggcagtcagaggaggggatcctatcccctggaacaggagttacaggcaa 382

                                                                       
Query: 183 ctctgagccaccgtgtgggtgctgggaagcaaacccaggacctctgcaagagcagccagt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctctgagccaccgtgtgggtgctgggaagcaaacccaggacctctgcaagagcagccagt 442

                                                                       
Query: 243 gctcttaaccactgagccatctctccagcccagcatagacaccctaactactttccccat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gctcttaaccactgagccatctctccagcccagcatagacaccctaactactttccccat 502

                                                                       
Query: 303 ttttatgaatgagagagttgtgtcctagtctcttctttttttgctttccttcaacaatgt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttttatgaatgagagagttgtgtcctagtctcttctttttttgctttccttcaacaatgt 562

                                                                       
Query: 363 tacccacagtgttttggagaacaagttatctggctccttgattttagccttttatctgaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tacccacagtgttttggagaacaagttatctggctccttgattttagccttttatctgaa 622

                                                                       
Query: 423 tgttttactctactgtcttaggtttacagttatatttttatttgtgtgtatgtgtgattg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgttttactctactgtcttaggtttacagttatatttttatttgtgtgtatgtgtgattg 682

                                                                       
Query: 483 tgtgagtgtgtatcacatgaggtcccacacccaaggaggccggaagagaccactaaactc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgtgagtgtgtatcacatgaggtcccacacccaaggaggccggaagagaccactaaactc 742

                             
Query: 543 ctgaagctaggcttacag 560
           ||||||||||||||||||
Sbjct: 743 ctgaagctaggcttacag 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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