Query= MSMg01no262_f11.b1 MSMg01no262_f11.b1 CHROMAT_FILE:
MSMg01no262_f11.b1 PHD_FILE: MSMg01no262_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:58 2005
(367 letters)
>mm_chr5_135813429_135814198
Length = 770
Score = 654 bits (338), Expect = 0.0
Identities = 358/366 (97%), Gaps = 3/366 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctgtttcccgccactaaaaagtcagcattggctatcagtcaatgaagaaaga 63
||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctggttacagccactaaaaagtcagcattggctatcagtcaatgaagaaaga 263
Query: 64 taacactgtggagagatgccggggcagacaaggctaagcccactggcaaaggtcctggac 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 264 taacactgtggagagatgccggggcagacaaggctaagcccactggcaaaggtccttgac 323
Query: 124 acaaggccatcatttggaaagatagcagctgggaaggcaaaaact---gttagtgggctc 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 acaaggccatcatttggaaagatagcagctgggaaggcaaaaactactgttagtgggctc 383
Query: 181 aggccaagacctgctaaatgacccttttcctacatgttgtccaactcattttgacatctt 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 384 aggccaagacctgctaaatgacccttttcctacatgttgtcgaactcattttgacatctt 443
Query: 241 tcctcctaaaaaatggtcagattgccccaaaattcattatctaacctgaggatacttccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcctcctaaaaaatggtcagattgccccaaaattcattatctaacctgaggatacttccc 503
Query: 301 ataccagacaggaagcagcaaagagactgcatccaaatgaaaatgatgcacacaccacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ataccagacaggaagcagcaaagagactgcatccaaatgaaaatgatgcacacaccacag 563
Query: 361 caatgg 366
||||||
Sbjct: 564 caatgg 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 770
Length adjustment: 9
Effective length of query: 358
Effective length of database: 761
Effective search space: 272438
Effective search space used: 272438
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_f11.g1 MSMg01no262_f11.g1 CHROMAT_FILE:
MSMg01no262_f11.g1 PHD_FILE: MSMg01no262_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:58 2005
(192 letters)
>mm_chr5_135974977_135975568
Length = 592
Score = 339 bits (175), Expect = 9e-98
Identities = 190/199 (95%), Gaps = 7/199 (3%)
Strand = Plus / Minus
Query: 1 ctcagttgaggctccttcctctctaatcaatctggcttctgtcatgttgacagaaagctt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 459 ctcagttgaggctccttcctctctaatcaacctggcttctgtcatgttgacagaaagctt 400
Query: 61 gacat-------acgaggttaatccctggccatgcacgagcaacatacagcatttcccac 113
||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 399 gacatacgacacacgaggttaatccctggccatgcatgagcaacatacagcatttcccac 340
Query: 114 cctcccagtgccccacaccctccccaaacatacagaaaatattaaggctgagtcctctgg 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cctcccagtgccccacaccctccccaaacatacagaaaatattaaggctgagtcctctgg 280
Query: 174 gtttatacacactttagtg 192
|||||||||||||||||||
Sbjct: 279 gtttatacacactttagtg 261
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space: 107456
Effective search space used: 107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
