BAC Information

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BAC

Clone NameMSMg01-262O17
Chromosome5 (Build37)
Map Location 99,442,618 - 99,442,937
singlet/doubletsinglet
Overlap genePrkg2
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik, Bmp3
Downstream geneLOC100041680, Rasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262O17.T7 (MSMg01no262_o17.b1)MSMg01-262O17.TJ (MSMg01no262_o17.g1)
ACCAG404887AG404888
length721847
length of high quality
(start - end)
631 (46 - 676)220 (69 - 288)
definitionCHROMAT_FILE: MSMg01no262_o17.b1 PHD_FILE: MSMg01no262_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:40 2005CHROMAT_FILE: MSMg01no262_o17.g1 PHD_FILE: MSMg01no262_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGGTTGGTTACCCAGTGCACTTTGTGTAAGTCACAAGGCTGCAG
AGTAGGGTTCAGGCCAATGTGTTTTTTTTTTTCTAGTACCTTCTAGACCA
GTGGTTCTCAACCGACTTAATGCTTTGACCCTTTAATATACTTCTTGATG
TAGTGGTGAAGCTCAACCATGAAATTATTTGTTGCTACTTTATACCCATA
ATTTTGCTACTCTCATGAGTTGTAATGTAAATATCTGATATTCAGGATAT
CTTATATGCAAGCCCCTTGGGGATCATGACCCACAGGTTAGGAACCTCTG
TTTTAGAGGAAGGTTCTTTTCCAAGCTCATATAACTGTTGTAGAATTAAG
TGCATTGTGGATACAGGACCCAGGTCCTAGATTTCTTACTGGTTTCAGCT
GAGGGCTGAGCTCTGCAACTTAGACCTTTTGAGAGTTCCCTGCAGTGTGT
GCCTCTCTCAGGCCTCCTCACCACAGGCACTTCTTTGTGGCAGTTTGGGA
GTCTCTTTATAGTTGGCTTAGATATGGTCATAAAACCCTGATGTGGCCTT
CCACTACTGTGTGTTTTTGTTGGTGATGAAAAGGTCCTTGGACCTGCCTC
CATTGTATGGCAATGTGTTGTGGAAGGCTGTGAAGTAAAAGCCACACCAA
ACTCTTACCTCTTTGAGTGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTCATCTGCCCGGGTCAGCAAGGAAACTCT
AATGGGCTTGATTTACAAAGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGACGATGAA
TAAGACGAAGAAGACGACTTTTTTTTCGACGATTCCCATTATCATTGCTC
CGTTTTTGTTTTTTCTCTCTCCCGCCCCTGCCCTTGTCCACTGTATTTTG
GTTCCTTCTTCCTTTGTCGCCCTTCCTTTGTTTTCATCTTTCTTTTCTGT
TCGTTGTCTCCCCCTATGTTCATCTTCCCCTTCTACTTTTTCGCTCTTCC
GCCTCTTTTCCCGGTTGCTTTTTTCTCCTGTTTTTGCCCTTTCCCTTTGT
CCCCCTTTTTCCCCTGGCCCTTTTGCTCCTCTTCTCTTTCTTCTTTGCTT
TCGCCCGTCCCTCTTTTTGCTGTTCCTCCCGTTTTATCCCCCCCCCCTTA
TGTTTTTCTATCCCCTGTGTTTTTTTCCCCTGCCCCTGCCTGCCTTTTGC
ACCCCCTCCCCTCTTTTTTTTCCCCTTGTCTTTGTCACTCCTTGTCCCTT
TTTCCCCCTTTTCTTCTCCCCCTCTCCGTTGTCCGTCTCTGTGTCACTCT
CTCCCTCGCCCCTCTTTCTTTTTCTTTTTTCTTGTTCCTCCTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_o17.b1 MSMg01no262_o17.b1 CHROMAT_FILE:
MSMg01no262_o17.b1 PHD_FILE: MSMg01no262_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:40 2005
         (631 letters)



>mm_chr5_99441907_99442937
          Length = 1031

 Score =  619 bits (320), Expect = 0.0
 Identities = 320/320 (100%)
 Strand = Plus / Minus

                                                                        
Query: 308  ttagaggaaggttcttttccaagctcatataactgttgtagaattaagtgcattgtggat 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 ttagaggaaggttcttttccaagctcatataactgttgtagaattaagtgcattgtggat 972

                                                                        
Query: 368  acaggacccaggtcctagatttcttactggtttcagctgagggctgagctctgcaactta 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  acaggacccaggtcctagatttcttactggtttcagctgagggctgagctctgcaactta 912

                                                                        
Query: 428  gaccttttgagagttccctgcagtgtgtgcctctctcaggcctcctcaccacaggcactt 487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  gaccttttgagagttccctgcagtgtgtgcctctctcaggcctcctcaccacaggcactt 852

                                                                        
Query: 488  ctttgtggcagtttgggagtctctttatagttggcttagatatggtcataaaaccctgat 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  ctttgtggcagtttgggagtctctttatagttggcttagatatggtcataaaaccctgat 792

                                                                        
Query: 548  gtggccttccactactgtgtgtttttgttggtgatgaaaaggtccttggacctgcctcca 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791  gtggccttccactactgtgtgtttttgttggtgatgaaaaggtccttggacctgcctcca 732

                                
Query: 608  ttgtatggcaatgtgttgtg 627
            ||||||||||||||||||||
Sbjct: 731  ttgtatggcaatgtgttgtg 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)