BAC Information

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BAC

Clone NameMSMg01-263K10
Chromosome5 (Build37)
Map Location 63,674,034 - 63,674,316
singlet/doubletsinglet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263K10.T7 (MSMg01no263_k10.b1)MSMg01-263K10.TJ (MSMg01no263_k10.g1)
ACCAG405413AG405414
length747798
length of high quality
(start - end)
515 (46 - 560)286 (81 - 366)
definitionCHROMAT_FILE: MSMg01no263_k10.b1 PHD_FILE: MSMg01no263_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:37 2005CHROMAT_FILE: MSMg01no263_k10.g1 PHD_FILE: MSMg01no263_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGTGACTGCCGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCCAGCTTGTACAACCACTCTGGAAATCAG
TCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGGAGCCTTATTTACAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCATCAGAGGAGTGGATACAAAAAATGTGG
TACATTTACACAATGGAGTTCTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGGCAACCCACCGCACCTGGAGGCCATTATCCTGAGTGAGG
TAACCCAATCACAAAAGAACTCAAATAATATATCCTCACTGATAAGTGTA
TATTAGTCCAGAAACTTATAATACCCAAGATATAAGTTACAATTTGCAAA
ACATATGAAACTCTAGAAGAACAAAAACCAAAGTGTGGACACTTTGCCTC
CTTTTAGAATTGTGAACATAACATCCATGTTACACGTTATCGAGTCCTAG
TTTGTATCTGATTTCCTACGACGTACTATCCTCACGTCTGCCCTATTAAG
TGTATCCATCCCTATAATCTTCCTCCTACCTCTTGACACCCTTGTAN
NNTTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTCTTCTAATACTTGT
AGATAATAGGTAATGTTATAAGTACCTTGCAAAATGTTTGTGTTCTGTCA
AGAGTGTTGCTGAAACAGTCTACATGCCCTGTATCTTCCTGACATTTTCA
ATTCAGTTTGAAACTTGTTTTTTCACATTTACCATTTTCTACTCATAAAT
CTATAGAGTTTTAAGGACATCTTAACAATTAGATATATATAAATGATTCA
ACCTATCTTCTTATATTCTAGCTCTTTAATCCTAAGTTTTCTTACTTATA
TATGTATTTAGGGTATTATTTTTTTATCCCCCCCCCCCCCCTACAGTAGT
TGAAACTTTATTTTCAATATTTTCCCCCCAACAAAAAAAAAAAAATCCCT
GAGCTGGCTTATTTTTACTTTTTGCTTCCCCGATCAATATACATTCACCT
CCTTTCCTCTTTCCTCTCTCCCTCATTTTCCCCCTTCCCCCTTTACATTT
TACCTCTATCCCTCTTTCTTTTTTTTCCCCCTTATTCTCCCCCCTTTTCC
CTCTATCTCACCTTTCTTTTTCTTTTCCCTCCCTTTTTTTTTCTTTTTTC
TCCCCTTTTTTCCCCCCTCCTTATCCTTTTTCCCCTTTCTTTTCACCCAT
TATTCTTTCTCCCTCCCCTTATTTTCCCTTTTTCCTCCCCTTCTCCTTCT
TTTCACTTTTCTCCCTTTCCCCCTCTTTTGCTTCCTTCCCTTCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_k10.g1 MSMg01no263_k10.g1 CHROMAT_FILE:
MSMg01no263_k10.g1 PHD_FILE: MSMg01no263_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:38 2005
         (286 letters)



>mm_chr5_63673834_63674516
          Length = 683

 Score =  487 bits (252), Expect = e-142
 Identities = 277/286 (96%), Gaps = 3/286 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttattcttctaatacttgtagataataggtaatgttataagtaccttgcaaaatgtttg 60
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 201 tttattcttctaatacttgtagataataggtaatgttacaagtaccttg-aaaatgtttg 259

                                                                       
Query: 61  tgttctgtcaagagtgttgctgaaacagtctacatgccctgtatcttcctgacattttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgttctgtcaagagtgttgctgaaacagtctacatgccctgtatcttcctgacattttca 319

                                                                       
Query: 121 attcagtttgaaacttgttttttcacatttaccattttctactcataaatctatagagtt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 320 attcagtttgaaacttgttttttcacgtttaccattttctactcataaatccatagagtt 379

                                                                       
Query: 181 ttaaggacatcttaacaattagatatatataaatgattcaacctatcttcttatattcta 240
           |||||||||||||||||||||||||||||  |||| |||| |||||||||||||||||||
Sbjct: 380 ttaaggacatcttaacaattagatatata--aatgtttcagcctatcttcttatattcta 437

                                                         
Query: 241 gctctttaatcctaagttttcttacttatatatgtatttagggtat 286
           ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 438 gctctttaagcctaagttttcttacttatatatgtatttagggtat 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 683
Length adjustment: 9
Effective length of query: 277
Effective length of database: 674
Effective search space:   186698
Effective search space used:   186698
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)