BAC Information

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BAC

Clone NameMSMg01-263O24
Chromosome5 (Build37)
Map Location 31,480,540 - 31,480,910
singlet/doubletsinglet
Overlap geneGtf3c2
Upstream geneHadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17
Downstream geneEif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263O24.T7 (MSMg01no263_o24.b1)MSMg01-263O24.TJ (MSMg01no263_o24.g1)
ACCAG405623AG405624
length777753
length of high quality
(start - end)		374 (46 - 419)502 (79 - 580)
definitionCHROMAT_FILE: MSMg01no263_o24.b1 PHD_FILE: MSMg01no263_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:59 2005CHROMAT_FILE: MSMg01no263_o24.g1 PHD_FILE: MSMg01no263_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGCCAATCTGCGATAAAAACCTGTCTCCAAGAAAGTGGTCTTG
TAAAACAAGTAACAACAAACCAATATTCAGACTTTAGTAAACTAAGACAA
AATCAATCTGTCTTTGAACGTTTGGAAGGTGGTGGTAGCGCATGCCTTTA
ATCCCAGAACTTGAGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCA
GCCTGGTCTACAGAATGAGTTCCAGGACAGCCAGGGCTACACAAGAAACC
CTGTCTTGAAAAACCAAAAGAGAAAGTTTGTAAGATAAAGATAAGAAAGT
AAGTTAAGTAAGTTTGTAAGATCTTGCCTTCCTGGTTTACTACACTATTC
GAACTCGATGCATGAATCACCACCCCAACTTTTTTCAGTGAGTGACTCAA
CATACAAAAAAAAAATCCTTTTAAAAATTCACTTCTGAGGGAGGGTGTGG
GGGACTTTTGGGATAGCATTGCAAATGTAATTGAGGTAATTACGTTTTTT
CTTTATTCTATTTTATTTATTTCCAGATCATTCTCTCCTTCTAGTAAAAT
TCTTTTTTATACGTCTTGTAATAATTCCTTTTCTTTTTACCTGTTCTTTC
ATTTTTCCCATCATTGACTAATATTATTATGTTCCATATATATCTTCAAT
AACACCTCCTATACCGTATATATGTACCTCAATATTACTATAAGTTCAAT
AATTAGTTTTATTCCGTCTACTATCCG

NAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGAAATAC
AGAAGAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAAC
ACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAA
ACAGGTAGAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTGA
TGGAAATGAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACAATA
AAGAAAACCCAAAGTGAGGCGACGCTGGAGATAGAAACCCTAGGAAAGAA
ATCTGGAACCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGGAAG
AGAGAATCTCAGGTGCAGAAGACTCCCCACACAACATCGGCACAACAATC
AAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAAT
CCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGA
ATGAAGATTTTCAACTCAAAGGACCAGCAAATATCTTCAACAAAATTATT
GAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACTAGA
AGCCTATAGAACTCCAAATAGACTGGACCATGAAAGATATTCCTTCCGAC
ACATTATAATCAGAAACCTTATGTACTAATTAAAGATATATTATTTAAAG
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_o24.b1 MSMg01no263_o24.b1 CHROMAT_FILE:
MSMg01no263_o24.b1 PHD_FILE: MSMg01no263_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:59 2005
         (374 letters)



>mm_chr5_31480337_31481110
          Length = 774

 Score =  702 bits (363), Expect = 0.0
 Identities = 369/371 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggccaatctgcgataaaaacctgtctccaagaaagtggtcttgtaaaacaa 63
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggccaatcagggataaaaacctgtctccaagaaagtggtcttgtaaaacaa 263

                                                                       
Query: 64  gtaacaacaaaccaatattcagactttagtaaactaagacaaaatcaatctgtctttgaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtaacaacaaaccaatattcagactttagtaaactaagacaaaatcaatctgtctttgaa 323

                                                                       
Query: 124 cgtttggaaggtggtggtagcgcatgcctttaatcccagaacttgagaggcagaggcagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgtttggaaggtggtggtagcgcatgcctttaatcccagaacttgagaggcagaggcagg 383

                                                                       
Query: 184 cagatttctgagttcgaggccagcctggtctacagaatgagttccaggacagccagggct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagatttctgagttcgaggccagcctggtctacagaatgagttccaggacagccagggct 443

                                                                       
Query: 244 acacaagaaaccctgtcttgaaaaaccaaaagagaaagtttgtaagataaagataagaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acacaagaaaccctgtcttgaaaaaccaaaagagaaagtttgtaagataaagataagaaa 503

                                                                       
Query: 304 gtaagttaagtaagtttgtaagatcttgccttcctggtttactacactattcgaactcga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtaagttaagtaagtttgtaagatcttgccttcctggtttactacactattcgaactcga 563

                      
Query: 364 tgcatgaatca 374
           |||||||||||
Sbjct: 564 tgcatgaatca 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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