BAC Information

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BAC

Clone NameMSMg01-264A07
Chromosome5 (Build37)
Map Location 82,085,485 - 82,085,773
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264A07.T7 (MSMg01no264_a07.b1)MSMg01-264A07.TJ (MSMg01no264_a07.g1)
ACCAG405681AG405682
length707886
length of high quality
(start - end)
289 (409 - 697)37 (83 - 119)
definitionCHROMAT_FILE: MSMg01no264_a07.b1 PHD_FILE: MSMg01no264_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:06 2005CHROMAT_FILE: MSMg01no264_a07.g1 PHD_FILE: MSMg01no264_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATATCAAGAGAATCCGCGGAATTCCACCATATTTCAGAAAACTG
AGACTAAGAGCTATGAAAGTTGTGAGGTAAAAAGGGTATATTCAATCTAT
TTAAATTAACTAAAAATTTCTATAACTATTTTGCCTCTGTGTCATTGAGC
CTTAGTACTGAATAATACATATGTATATATATCCCTGAGAAATGAAAGGT
GGCTCACTTGCCTTTGAGCACCTTCTATTACTTAGAATCCTTATGCTAAG
GTTTGAATGTGAGCACACTGTCCTCTACAGTTGGTTTGTTTATTTTTACT
GAAGTGCCATTAGGACATGTTCCTTGATAGGTTTTTTAGGCCCACCCACC
CCCCGCATTAATGTTTGAAAACTCAGTCCTGCTACCTGCTTACTCTGCTT
ACAGATTGCTTGAGCTGACCACCATGAAACCATCTGCCCACCATCATTCC
TTCCCCACCATAATGGAGCCTACTCCCAACCTAAGCCAAAATAAACCTTT
CTTCCCTTGTGTGTTGTAAGGTATCTGGCCAGAGCAATGAGTGGAGAAAA
GGTTGCATACAAGAATGATTGATGTACATGAAAAGATATAATATTAATTG
AGCAATGCAAGTATAATAACACAAATGTTTATGATGTATCATGGGAATAT
AGCACTGGTAAAAGAAAATCTGTGGAAAGGAGGAAGGATAATCAGAGTCG
ATGTGAA
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTAAGGCCAAATTAA
ATGCATGAGACCCTACCGATTTGACCCCCAGCATAGATAGGTAGGTAGGT
AGATAGATAGATAGATAGATAGATAGATAGATAGATCCATCCCTCCTTTC
TCCTCCCTCTCTCCCCCTCTCTCCTCCTCCCCCCCCCCCCCCCCCCCCCT
TCCCCCCCCCTCTCCCTCCCCCCCCCTCCCCCCCCTCTTCCCAGACTTTT
CCCTAATTCTCCCCCCCCCCCCCCCCCACCCCTTTTTTTTTCCCCCCCCC
CTTCCCCCCCCCCCCCCTCTTCCTCTTCCTTTTTTTTTTTTCCCCCCCCC
CCCCCCCCCCCCTCCCCTCCCCTCCCTCCTCTCCTCCTCTCCCCCCCCCC
CCCCTTTCCTTCCCCCTATCCTCCCTCCTCTTCCTCTCCTCTCCCCCCCT
CTCCTCCTCCCTCCCCCTTTCTCCCCTTTACTCCCCTCCCTCTTCCCTCT
TTTTTCTTCCTCTTTCTCTTCCCCCACCCCCCTCTTCTTCTTCCTTTCCC
CTCCCCCCTCCCCCCTTCCCCCTCCTCCTTTCCTCCCCTACCATTTCTCC
CCCTCCCCCTTTCCCTCCCCCCTTCTCCCCTTTTCCCCCCCTCCCTCCCC
CTCCTTCCCCCCCCCCCCCCCCCCCTCCTCCCTTCCTACTTTTTCTTTTC
TCCTCCCCTTCCATCTCTTCCCCCTCTATCCTTCCCCTCCCCTCCTCCTC
CTCCTCCCTTTCCCCTCCTTTTCTTCTCCCCCCCCCCTCTTTCTCTTTCC
TCCCTCTCTCTCCCCCCTCTCCCCCTCTCTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_a07.b1 MSMg01no264_a07.b1 CHROMAT_FILE:
MSMg01no264_a07.b1 PHD_FILE: MSMg01no264_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:06 2005
         (289 letters)



>mm_chr5_82085152_82085840
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgagctgaccaccatgaaaccatctgcccaccatcattccttccccaccataatggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cttgagctgaccaccatgaaaccatctgcccaccatcattccttccccaccataatggag 563

                                                                       
Query: 61  cctactcccaacctaagccaaaataaacctttcttcccttgtgtgttgtaaggtatctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cctactcccaacctaagccaaaataaacctttcttcccttgtgtgttgtaaggtatctgg 503

                                                                       
Query: 121 ccagagcaatgagtggagaaaaggttgcatacaagaatgattgatgtacatgaaaagata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccagagcaatgagtggagaaaaggttgcatacaagaatgattgatgtacatgaaaagata 443

                                                                       
Query: 181 taatattaattgagcaatgcaagtataataacacaaatgtttatgatgtatcatgggaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taatattaattgagcaatgcaagtataataacacaaatgtttatgatgtatcatgggaat 383

                                                            
Query: 241 atagcactggtaaaagaaaatctgtggaaaggaggaaggataatcagag 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atagcactggtaaaagaaaatctgtggaaaggaggaaggataatcagag 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)