BAC Information

Click to search

BAC

Clone NameMSMg01-264B03
Chromosome5 (Build37)
Map Location 12,443,182 - 12,443,490
singlet/doubletsinglet
Overlap geneSema3d
Upstream geneLOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059
Downstream geneLOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264B03.T7 (MSMg01no264_b03.b1)MSMg01-264B03.TJ (MSMg01no264_b03.g1)
ACCAG405719AG405720
length716802
length of high quality
(start - end)
313 (45 - 357)246 (74 - 319)
definitionCHROMAT_FILE: MSMg01no264_b03.b1 PHD_FILE: MSMg01no264_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:10 2005CHROMAT_FILE: MSMg01no264_b03.g1 PHD_FILE: MSMg01no264_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCTTACTGTTTTTGATCATTGTTCTGTCCTTCACAAATGAGTCT
AGCTTGAACTTACTTATGGAGTATAATCCATGTCTATTTTAAACTTACTT
ATAAAAGGCTATTACTTTCTTAAGCTGCTTTTGATAACATTTCTTGTATA
TCTATTTTAGAAGTATTTTGTTGCATTTTAATTAGTTGTATATTGTACCG
GTTAGTTTTTGTCAATTTGGTATAAAGACAACTGAGAAGAAGAATACTAA
CTGTGCCTCCCTTCGATTTGCCTATGGGCATGTTTTCCTTATGCTAACTG
ATATAGGAGGTTAAAGCTCACTGCACACCTGTGGACAGTGTCATCTGTGA
CCTGGTGGACCTGAGTTGTCTGAGTTGTATAGGAAAAGTAGCTGCAGGTG
AAACTGAAGCAATCTGACAGACAGCCTTTCTTCATGGATTTCCCTTCACT
TCTTGCCTTTAGGTTCTTATCTTGAGCCCAGACTCCTCTCAATGATGGAC
TATAACCTGTGAACTACATAAAGATTTCCCTCCCTAAGATATTTTTTACT
TTGGAGCTTATCTCAGCCAAAGAAATACGTAACACCGAAAGAAAATTTTG
CTTCTTCTGGAATGAATTTAATCTTGCCCTCACATTAAAAACTGATAGTA
AGATATGATATGAATG
CGATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTAACTGAGGAAACTCGAAGGACTCAG
AAACACCTAAAGAAATGTTCTTCACCCTAAGTCATCAGGGAACTGCAAAT
CAAAACGACCCAGAGATTTCACCTCACCAGTCAGAATGGCTAAGATGAAA
AACTCAGGAGACAGCAGATACTGGTGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGATGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAG
TCTGGTGATTCCTCAGAAAATTGATCAAAGTACTACCTGAGGACCTAGCT
ATACCACTCCTGGCTTATTTTTCAGACCCCGCTCCCCCATGTAATAGGGA
CACCTGCTTCTCTATATTCCATAGTAGCCTTATAAATAATAACCAGAATT
TGGAAGGAACCCAGATGTCCCTCTTCAGAGGAATGTATACACAAAATGTG
GTACATTTACTCTATGGAGTACTACTTCAGCCTTTAAAAAACATGACTTT
CTTGAAATTTGTAGGATTGGGATGCAACTTGAGAATATCAATTCTGAGTG
GAGGTGAACTCATATCTCTTGGAATTCCTATGTTCATTTTTACTGTTTAA
TGGGGATATTATGCCTAAAAAGTTTCAGAATACCCCGAAAATTCACTTTC
TTCAGATCCATTATGGAAGTTCTTAAGCAATAAAGTGTATATCCATAAAT
TATGAAATGGTTTCCAGTGTGCTTTTTTCTCAATGAGGGGAATCTATATT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_b03.b1 MSMg01no264_b03.b1 CHROMAT_FILE:
MSMg01no264_b03.b1 PHD_FILE: MSMg01no264_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:10 2005
         (313 letters)



>mm_chr5_12442978_12443690
          Length = 713

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcttactgtttttgatcattgttctgtccttcacaaatgagtctagcttgaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcttactgtttttgatcattgttctgtccttcacaaatgagtctagcttgaa 264

                                                                       
Query: 65  cttacttatggagtataatccatgtctattttaaacttacttataaaaggctattacttt 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 cttacttatgaagtataatccatgtctattttaaacttacttataaaaggctaatacttt 324

                                                                       
Query: 125 cttaagctgcttttgataacatttcttgtatatctattttagaagtattttgttgcattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 cttaagctgcttttgataacatttcttgtatatctattttagaagtattttgttgtattt 384

                                                                       
Query: 185 taattagttgtatattgtaccggttagtttttgtcaatttggtataaagacaactgagaa 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taattagttgtatattgtacaggttagtttttgtcaatttggtataaagacaactgagaa 444

                                                                       
Query: 245 gaagaatactaactgtgcctcccttcgatttgcctatgggcatgttttccttatgctaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaagaatactaactgtgcctcccttcgatttgcctatgggcatgttttccttatgctaac 504

                    
Query: 305 tgatatagg 313
           |||||||||
Sbjct: 505 tgatatagg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)