BAC Information

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BAC

Clone NameMSMg01-264B09
Chromosome5 (Build37)
Map Location 45,694,708 - 45,695,052
singlet/doubletsinglet
Overlap geneLOC100040737
Upstream geneLOC100040717, LOC545747, Ldb2, LOC100041481
Downstream geneQdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264B09.T7 (MSMg01no264_b09.b1)MSMg01-264B09.TJ (MSMg01no264_b09.g1)
ACCAG405731AG405732
length729801
length of high quality
(start - end)
348 (382 - 729)---
definitionCHROMAT_FILE: MSMg01no264_b09.b1 PHD_FILE: MSMg01no264_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:11 2005CHROMAT_FILE: MSMg01no264_b09.g1 PHD_FILE: MSMg01no264_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGCTTCAATTAGCCAACATGAGAGCCAGTTTTCTAGGTTCTAG
AAAGTGAAGAGCTACCCAGCCCCACACTCTTTAGTGACCTTAGTAAGAAC
AGGTTTGGAGTAGTCTTCACTGATGATCCAATGGTTCTTCTAAAACACTA
CTCCATCCTTTTCCTCTTATGCTCATGGGAGGCAGTGAGTGCTCTTTTCA
CACAAAAAGAACAGAGCTTTGTAGACATACCTAACTTCTCTCCCAATGCT
GTTTATGTCCAACAGTGGGATCCTGAACTAGTCCTTCACTCACTTAACAC
ATAAGGAATATTTATCTAGGCTCCCGCTCCAGATACTACCCTGAGAATTA
GATATCGTTATTCAAAGAGCCAGACAACAGCCAAGCCAGCCCACAATAAC
CACAATCTGAAGTAAACATTATGAGCATGTTGCACAGAGATTGTGAGGTG
TTCCTTGGTGACCCCTGCCTCCTCACAACCTCATGTAACCCTTTCCTGTA
AATATAATCTGAACCCAGTGACTTAAGTCTTCTAAACAATATAACATGAT
AAAATAGTAGTGGGGGTCATCGCCTCCAGGATTTAAATTTGGTCAGCACT
ACACTGCAGCATGCAAGATCATATGCTAGGTAAAACAAAATGAGGTCTTT
AGTTCTCCACAGCACTGTTTATATCACAG
NCAAAAAATTTNNNNNNNNNNNNNNNNTTTTTTNNTTTCCATATATTNTA
ACCTGTGTCCGCTTTCCCAACTTTANTGACCTATNAATTATCCGCGNATT
CCTGTCTCTCAAACTGCAATCTTGTCACAAAAATGCTTCTTCCCCTGTGT
GNTTCTANCTGTTTNTCTANNNTNATAANATCATGTTCTGTTTTGACCCC
CNTCTTTCNCTGTANCTCATGNCTCCCTATGNCCTTTTCTGTTTATCTCT
TGATCTCTTTCCCCTTTTCTTAACTTATTCCCCCTTTNTAATATTTATAA
ANTTTATTTTTTTTATTTTTTTGCTTTTGTNNNNNTTTCTTTCTTTTTTT
AACTTTTTTCNTTTTCCCCCCCCCCCCTCCCTTTTTTTTCCTTTTCCCCT
TTCCAAATCTCTCTTTTTTTTTTTCTCCTTTTTTTNTTTTTCCGGTTTTC
TCTTTNTTTAAATTCTTTTTTCCTCTCTCCCCCTCTCTTTATAATATCCC
TTTTTTTTCCCTCTTTNCTTTTTTTCTCTCTTTTTAATTTTTCCATCCCN
TNTTCCTTTTGTTTCCTCTTTATTACACATTACAATATCAATAAAATATA
ATTGTTACCTCTGNAGTNTGNTNTTTTGTTTTTACCTTTTTCTTCNTTTT
TCTTCTCTTTTCTTCTCCTTCCTTTCGATTTCTTTCTTTTAATATATATT
TTAAAAAATGCGTGAGCCCTCGCCATGCTTTAAACCGGTTTTATATTTNT
NTNNTNTCNTTCTTTCTCTTCACTCCTATAAAAAACAGTTTCTTTTCTGC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_b09.b1 MSMg01no264_b09.b1 CHROMAT_FILE:
MSMg01no264_b09.b1 PHD_FILE: MSMg01no264_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:11 2005
         (348 letters)



>mm_chr5_45694508_45695252
          Length = 745

 Score =  619 bits (320), Expect = 0.0
 Identities = 340/348 (97%), Gaps = 3/348 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatactaccctgagaattagatatcgttattcaaagagccagacaacagccaagccagcc 60
           ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 201 gataccaccctgagaattatatgtcgttattcaaagagccagacaacagccaagccagcc 260

                                                                       
Query: 61  cacaataaccacaatctgaagtaaacattatgagcatgttgcacagagattgtgaggtgt 120
           |||   ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 cac---aaccacaatttgaagtaaacattatgaacatgttgcacagagattgtgaggtgt 317

                                                                       
Query: 121 tccttggtgacccctgcctcctcacaacctcatgtaaccctttcctgtaaatataatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tccttggtgacccctgcctcctcacaacctcatgtaaccctttcctgtaaatataatctg 377

                                                                       
Query: 181 aacccagtgacttaagtcttctaaacaatataacatgataaaatagtagtgggggtcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aacccagtgacttaagtcttctaaacaatataacatgataaaatagtagtgggggtcatc 437

                                                                       
Query: 241 gcctccaggatttaaatttggtcagcactacactgcagcatgcaagatcatatgctaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcctccaggatttaaatttggtcagcactacactgcagcatgcaagatcatatgctaggt 497

                                                           
Query: 301 aaaacaaaatgaggtctttagttctccacagcactgtttatatcacag 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaaacaaaatgaggtctttagttctccacagcactgtttatatcacag 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 745
Length adjustment: 9
Effective length of query: 339
Effective length of database: 736
Effective search space:   249504
Effective search space used:   249504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)