BAC Information

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BAC

Clone NameMSMg01-264G06
Chromosome5 (Build37)
Map Location 108,831,920 - 108,832,205
singlet/doubletsinglet
Overlap genePde6b
Upstream geneAbhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg
Downstream geneAtp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264G06.T7 (MSMg01no264_g06.b1)MSMg01-264G06.TJ (MSMg01no264_g06.g1)
ACCAG405950AG405951
length726872
length of high quality
(start - end)
347 (380 - 726)287 (123 - 409)
definitionCHROMAT_FILE: MSMg01no264_g06.b1 PHD_FILE: MSMg01no264_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:33 2005CHROMAT_FILE: MSMg01no264_g06.g1 PHD_FILE: MSMg01no264_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGGATTGCCGACACCTATATTTTGAGCCTCCTGCTTCTCTTGAA
CCAGTTGCTCAAGTACCTGCCACTTTTCTTATGTCATGGGCCACTGCTCT
TGCCAGACAGGCTGGCTTGATAACCATTTTAGGGGCCAAAGGTGTGTTTG
CTGTGGCCCCTTGGTTCATTGCCTGGTGACAAGAAGTTACTTTGTATGCC
TCTCTTTGACTGACAGTCTTTAGACCGGTGTTTGCCCTTTCTACAGCAGC
TAGGATTCCCTGAAATGCTTTGTGGCTCATAGCAACCAGAACCTGCTTAT
TCTCGACTATTTTACCATGCCCCCCCCACTCAGTGCGCCTGCTATTATGA
ACTCTGAATCTTCTAGCCCTACAATTTCTTTGTAAATGACCAAATTCACC
ACAAAAAAATGGATATTTTGATTCCTGAAATTTCTAGCTATGATTTGTCC
AATGATATTAGCATTATGCTTCTAGGAGCCAATACCAGGTGACTCCCTTA
TCCATTCATCTACTGGGGCTCCTTGGGCTTTCAATGGTCTGATTGCTCTC
TTATGTTCAGTATTTGCATTTTCAAATGCCAATTATTTCTATCAAAGGCT
GTCTGGTTTCAGAGTCTGATATGGCTCTATTCGCAGCTGATCCCAACCTC
TGTAAAAATTCTGTAAAGGTGTCTCN
TTTTTTTTTTTNNNCANCTNTTATATTATTTACATTTTTATTTCCCTCTA
TGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGACACTGTCTCTGGGCAGAGAGAGAG
AGTTCACCCTGTTTCTGGGGTTCTACTAAGCTCACCTAACCTCTGATTCC
TAAGAAATCTTCCAAGTTTTCCAAATAGCCCCTACAAAGTTCTAGAGCAC
CTGTCTTCTTTTGGGCAAAGTTGGCCTCCTGTATGCTCAAATCTGCCCCA
CTGCCCCTACCCTCATAACTTCTAGCCCAGGTGACTATCTCCTTCTTCCA
GCACCTCCAAACCTGCTGCACTACTCTTCCTGGATAATTATGACTGCATG
AAGGATGGACTCTGTTTTGTTTGCCCCCCCGCCCCAGACACTATTACCAA
GACAAATTGGCTGGGGAGCTGAAGTTGAGAGATTCCTATTTCTTGGGATC
TATCCACCTACCCTACACTTGAACTCTGCTCCACCATAAGACTTTGTGAC
ATGGTGAGTTTGCCCATCTCTGATCTCATGGAGGATTCCAGGAGGGCTCT
TTAAGGATCCCCATATCTACTACCCCCTAGATATAAAAGGAACCCTGCTT
TCTGAAGTTTAGTTTCCACCTTCTGAAAAGGAAACAGGTTTATTCCTAGC
CTAGTTTTCACGTATACTTAGTTTTGCAGTCCGGATAAGCTTCATAACAT
AAATATGTACCCTCGCCCTTTAAACTTCTTGTCTTTCCTGAGTCCATTTT
CTTTTAATTTTCCCACGGAAAACTTAATAATCAGCCCCTCGGGCGTATTA
ATTGCTCTTGAATGATTGCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_g06.g1 MSMg01no264_g06.g1 CHROMAT_FILE:
MSMg01no264_g06.g1 PHD_FILE: MSMg01no264_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:33 2005
         (287 letters)



>mm_chr5_108831720_108832405
          Length = 686

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggacactgtctctgggcagagagagagagttcaccctgtttctggggttctactaagct 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 486 aggacactgtctctgggcagagagagagagttcaccctgttcctggggttctactaagct 427

                                                                       
Query: 61  cacctaacctctgattcctaagaaatcttccaagttttccaaatagcccctacaaagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cacctaacctctgattcctaagaaatcttccaagttttccaaatagcccctacaaagttc 367

                                                                       
Query: 121 tagagcacctgtcttcttttgggcaaagttggcctcctgtatgctcaaatctgccccact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tagagcacctgtcttcttttgggcaaagttggcctcctgtatgctcaaatctgccccact 307

                                                                       
Query: 181 gcccctaccctcataacttctagcccaggtgactatctccttcttccagcacctccaaac 240
           ||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 306 gcccctaccctcagaacttctagcccaggtgactatctccttcttccagtgcctccaaac 247

                                                          
Query: 241 ctgctgcactactcttcctggataattatgactgcatgaaggatgga 287
           ||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 246 ctgctgcac-actcttcctggataactatgactgcatgaaggatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space:   188206
Effective search space used:   188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)