Query= MSMg01no264_n03.b1 MSMg01no264_n03.b1 CHROMAT_FILE:
MSMg01no264_n03.b1 PHD_FILE: MSMg01no264_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:07 2005
(513 letters)
>mm_chr5_63282497_63283409
Length = 913
Score = 839 bits (434), Expect = 0.0
Identities = 491/512 (95%), Gaps = 5/512 (0%)
Strand = Plus / Plus
Query: 5 gaattcccagcagtccc---ccccagcctcatgtaactgcattttgtctgatgcattgac 61
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcccagcag--ccataccccagcctcatgtaactgcattttgtctgatgcattgac 261
Query: 62 ttgcatcgatcacatcagtagtacctctggcttccagttggatttgcttaatggcaagac 121
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 262 ttgcatcgatcacattagtagtacctctggtttccagttggatttgcttaatggcaagac 321
Query: 122 ctaacaagtgactggaaggcaggagagaagcgaattgcatcacaccatacttttccttcc 181
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 322 ctaacaagtgactggaaggcaggagagaagtgaattgcatcacaccatacttttccttcc 381
Query: 182 tagggccatgattctaaagctcgagccctcatctaaactcctgccagcagggcttaccta 241
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 382 tagggccatgattctaaagctctagccctcatctaaactcctgccagcagggctttccta 441
Query: 242 ctggggtttggtagctggtttttctcctttcctttgtactgtagcttacaccagcatcct 301
||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 442 ctggggtttggtaactggtttttctcctttcctcagtactggagcttacaccagcatcct 501
Query: 302 ttcaggagaagctgttctattcttttgcttcccatgagttccttctattaagacaagcat 361
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttcaggagaagctgcactattcctttgcttcccatgagttccttctattaagacaagcat 561
Query: 362 cctttgattattgctaatttatcaccccatctgtttcttattgaaatcccagccaattca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cctttgattattgctaatttatcaccccatctgtttcttattgaaatcccagccaattca 621
Query: 422 tctctatgccttcacctcacactcaagaaacctgttttaccataaggggagtgatgtatt 481
|||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 622 tctctatgccctcacctcacactcaagaaacctattttaccagaagggaagtgatgtatt 681
Query: 482 tatatgtaatttatagttttaaaaaagaatgt 513
||||||||||||||||||||||||||||||||
Sbjct: 682 tatatgtaatttatagttttaaaaaagaatgt 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no264_n03.g1 MSMg01no264_n03.g1 CHROMAT_FILE:
MSMg01no264_n03.g1 PHD_FILE: MSMg01no264_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:07 2005
(376 letters)
>mm_chr5_63449258_63450033
Length = 776
Score = 683 bits (353), Expect = 0.0
Identities = 372/381 (97%), Gaps = 7/381 (1%)
Strand = Plus / Minus
Query: 1 aattatgaatagacagagggaaaacacattgggtttttagagttctaggcctctaagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aattatgaatagacagagggaaaacacattgggtttttagagttctaggcctctaagaat 650
Query: 61 aaaaacaaacaaacaaacaaacaaaaaaacaa---aaaaaa--ccccaaaaaacaaaaca 115
||||||||||||||||||||||||||||| || |||||| |||||||||||||||||
Sbjct: 649 aaaaacaaacaaacaaacaaacaaaaaaaaaaaccaaaaaaccccccaaaaaacaaaaca 590
Query: 116 aaacaaaaaaaa--attaagtctgaaaagtaagaagtaaattacatctgacccagaaaca 173
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aaacaaaaaaaaatattaagtctgaaaagtaagaagtaaattacatctgacccagaaaca 530
Query: 174 gacttcttataaacactgtagcaactggagatgaagacactggtgccaaagcactagtga 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gacttcttataaacactgtagcaactggagatgaagacactggtgccaaagcactagtga 470
Query: 234 agctgcaggaaaactgtcaatccagcattctgaatccctaataattttattccaataaag 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agctgcaggaaaactgtcaatccagcattctgaatccctaataattttattccaataaag 410
Query: 294 attgcaatgaaaagaacatttcagattagaaaacgttgactttcccaccagcgagctgtc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 attgcaatgaaaagaacatttcagattagaaaacgttgactttcccaccagcgagctgtc 350
Query: 354 actgaactgacttctaaagga 374
||| |||||||||||||||||
Sbjct: 349 actaaactgacttctaaagga 329
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
