BAC Information

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BAC

Clone NameMSMg01-265C17
Chromosome5 (Build37)
Map Location 50,354,517 - 50,523,423
singlet/doubletdoublet
Overlap geneGpr125
Upstream geneLOC100041668, LOC100041659, EG433885, LOC666223
Downstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265C17.T7 (MSMg01no265_c17.b1)MSMg01-265C17.TJ (MSMg01no265_c17.g1)
ACCAG406511AG406512
length780753
length of high quality
(start - end)		315 (46 - 360)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no265_c17.b1 PHD_FILE: MSMg01no265_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:35 2005CHROMAT_FILE: MSMg01no265_c17.g1 PHD_FILE: MSMg01no265_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,523,113 - 50,523,423)(50,354,517 - 50,354,806)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCCCCAAAGCCCTCATATGTAGGTAAATTTGCCAACATTCTGAT
CTGAACTTCTGGCCTCCAGAACACAATGAATTTGTGTTGCTGTGGGACTC
TTGTTTGTAGTACTGTACCATAGTGACCCTAGCAAACCAACACAGTAGCA
AAACAGTTTGCTTTTATCTTAGGGGGTGAAATTTAGATAGAGTTTATATT
TGAGTTTAAGATTCATGGAATTGTGACTCACAGCTGGATTATCAAAATAT
ATTCTGCTTTTAGCTTGGAAAATTTCATGAATCCAGTTATCATAGAAGAA
ATTCTACCCATTNANATCAAACTCCNTNGCATTACCGATATCTGTTCCCA
TTATTGTGACAGAAGAGCCCACGCTCAAAATACAAAAATTATGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTTNTTTTTTTTCCTTTCTTTCTC
TTTTATTATTTAATTTATTATTCCCCTACCCATTTTCTCTTTTTATTATT
TTAAAATCATCTAAATATGCACCTCCTTACTATTCTTTATCCCTTTATCT
TTTAATTACATATAATTTTTCACATTTCATATATATTATTATTAGCAAAT
ATCATTAATAATAATCATAATATCGACTATAATTTTTAATTTATTTTAAG
AATATATGAACCATATCTTATTTATATATTCTTATATATCACAATAAACC
TAATTCCTTCACATTAAATACATTATTTTG

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCTCATCTAGCACAATCAGTCCAT
TCACAATTCTTTTTATCGTAACGGGCAGGAAGGAGACGTAACTCCGAACT
CATTTTGTCTTTTGTTGAGAGACAAAATTAATTCTTAAGATGAAGATCAA
TGACACAGGACATCAAAAAACTTCAAGAAGCTAGTATTTTATAGAGAGCT
GATACCTCCTTCTTGCTCTGCACATAACCACGAGACCCTCTCACTCCTTC
TGAGCTTGAGAGGCACAGTGGAGACTCTGATGCTCATAGCACTGAGAACC
AGTCAGCTTGCAAGTCTTTTCTTTGACCTCTCCCAGGCCACACCAATGTT
TCTTGCTGTTGTAAGTTACGACTGTGGTTCAACTAAAGCAAACGCAATAG
GTAATGAACACCTGCGATACAACAAAGGCTCACACTACCTCAGCATCGGT
CGTGGAGGAGCGGGTGGCTCATCCGGATCCTGGCATCTCTTGGCTTTCTT
GGTGACTTGTTTATAGATATTTCTAGCAGTGACTCCAACCCACAATACCG
TGGCAAGGGTAGAATAATGAAGAATGATCCCAACCTACAAAGAAGATTGG
ACAATGTATGACGATTAAAAGAACAAATGTTTCCTCGAGTCTGATTANNA
TGCAGTAGGAAGGCGGCTCCTTCACGTGCTCATGAAGAAATCGAGGTTCT
TAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_c17.b1 MSMg01no265_c17.b1 CHROMAT_FILE:
MSMg01no265_c17.b1 PHD_FILE: MSMg01no265_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:35 2005
         (315 letters)



>mm_chr5_50522764_50523478
          Length = 715

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccccaaagccctcatatgtaggtaaatttgccaacattctgatctgaacttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gaattcttccccaaagccctcatatgtaggtaaatttgccaacattctgatctgaacttc 601

                                                                       
Query: 65  tggcctccagaacacaatgaatttgtgttgctgtgggactcttgtttgtagtactgtacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tggcctccagaacacaatgaatttgtgttgctgtgggactcttgtttgtagtactgtacc 541

                                                                       
Query: 125 atagtgaccctagcaaaccaacacagtagcaaaacagtttgcttttatcttagggggtga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atagtgaccctagcaaaccaacacagtagcaaaacagtttgcttttatcttagggggtga 481

                                                                       
Query: 185 aatttagatagagtttatatttgagtttaagattcatggaattgtgactcacagctggat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aatttagatagagtttatatttgagtttaagattcatggaattgtgactcacagctggat 421

                                                                       
Query: 245 tatcaaaatatattctgcttttagcttggaaaatttcatgaatccagttatcatagaaga 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 420 tatcaaaatatattctgcttttagcttggaaaaattcatgaatccagttatcatagaaga 361

                      
Query: 305 aattctaccca 315
           |||||||||||
Sbjct: 360 aattctaccca 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no265_c17.g1 MSMg01no265_c17.g1 CHROMAT_FILE:
MSMg01no265_c17.g1 PHD_FILE: MSMg01no265_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:35 2005
         (290 letters)



>mm_chr5_50354317_50355006
          Length = 690

 Score =  514 bits (266), Expect = e-150
 Identities = 284/290 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctcatctagcacaatcagtccattcacaattctttttatcgtaacgggcaggaaggag 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tgctcatctagcacaatcagtccattcacaactctttttatcgtaacgggcaggaaggag 260

                                                                       
Query: 61  acgtaactccgaactcattttgtcttttgttgagagacaaaattaattcttaagatgaag 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtaactccgaactcattttgtcttttgttgagagacaaaattaattcttaagatgaag 320

                                                                       
Query: 121 atcaatgacacaggacatcaaaaaacttcaagaagctagtattttatagagagctgatac 180
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaatgacacaggatgtcaaaaaacttcaagaagctagtattttatagagagctgatac 380

                                                                       
Query: 181 ctccttcttgctctgcacataaccacgagaccctctcactccttctgagcttgagaggca 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccttcttgctctgcacataaccatgagaccctctcactccttctgagcttgagaggca 440

                                                             
Query: 241 cagtggagactctgatgctcatagcactgagaaccagtcagcttgcaagt 290
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtggagacgctgatgctcatagcactgagaaccagtcagcttgcaagt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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