Query= MSMg01no265_m04.b1 MSMg01no265_m04.b1 CHROMAT_FILE:
MSMg01no265_m04.b1 PHD_FILE: MSMg01no265_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:21 2005
(569 letters)
>mm_chr5_52545509_52546477
Length = 969
Score = 775 bits (401), Expect = 0.0
Identities = 418/425 (98%), Gaps = 3/425 (0%)
Strand = Plus / Minus
Query: 8 ttccaggagggccagggctacacagagaaaccctgtctcgaaaaacaaaaaaacccaaaa 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttccaggagggccagggctacacagagaaaccctgtctcgaaaaacaaaaaaacccaaaa 366
Query: 68 acaaacaaaaagttgataattatttagagaaaatgtatataaatgttctctctttgttgt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 acaaacaaaaagttgataattatttagagaaaatgtatataaatgttctctctttgttgt 306
Query: 128 ttaggttttacatctttctcactaaagattttgtgttatttgtgggtctttgttattatc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttaggttttacatctttctcactaaagattttgtgttatttgtgggtctttgttattatc 246
Query: 188 tttttgtttgtgggtgaatgcaagtgccccaggagaccagaggcttcagattcccctgga 247
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttttgtctgtgggtgaatgcaagtgccccaggagaccagaggcttcagattcccctgga 186
Query: 248 cctgcagctgcaggtgtcccagtgtgagccatgcaacatgggtgctaggaaccaacctct 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 cctgcagctgcaggtgtcccagtgtgagccatgcaacatgggtgctaggaaccaacctct 126
Query: 308 ggttctctggggaaaggtacactcttaaccacttagccatttttccagcactgtagcc-- 365
||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||
Sbjct: 125 ggttctctggggaaaggcacactcttaaccacgtagccatttttccagcgctgtagcctt 66
Query: 366 -ttttttttttttttttttttttaaataaaaagttgcctttcaaattttctcctgtgtgg 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tttttttttttttttttttttttaaataaaaagttgcctttcaaattttctcctgtgtgg 6
Query: 425 atgat 429
|||||
Sbjct: 5 atgat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no265_m04.g1 MSMg01no265_m04.g1 CHROMAT_FILE:
MSMg01no265_m04.g1 PHD_FILE: MSMg01no265_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:21 2005
(292 letters)
>mm_chr5_52405503_52406194
Length = 692
Score = 565 bits (292), Expect = e-165
Identities = 292/292 (100%)
Strand = Plus / Plus
Query: 1 attaggagatcagagttctgtccttggggtcagagaaaaaagtaaagacactttacattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaggagatcagagttctgtccttggggtcagagaaaaaagtaaagacactttacattc 260
Query: 61 gttttgtttaaaataagatgcagggagagatgaaatgagtaatgctctttgttgctgact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttgtttaaaataagatgcagggagagatgaaatgagtaatgctctttgttgctgact 320
Query: 121 aaagtccacagccaagaagtagccaaggataagcctcattgccttaaagtggataaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtccacagccaagaagtagccaaggataagcctcattgccttaaagtggataaaagc 380
Query: 181 atttgctggcccactctccccactttccgaaaacgactgagatcttgcctctaactttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgctggcccactctccccactttccgaaaacgactgagatcttgcctctaactttcc 440
Query: 241 aagaaacaactggaggttgttcatccaaatggccccactggtctccattcat 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaacaactggaggttgttcatccaaatggccccactggtctccattcat 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
