BAC Information

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BAC

Clone NameMSMg01-265M22
Chromosome5 (Build37)
Map Location 70,104,250 - 70,104,520
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265M22.T7 (MSMg01no265_m22.b1)MSMg01-265M22.TJ (MSMg01no265_m22.g1)
ACCAG406964AG406965
length750750
length of high quality
(start - end)
318 (45 - 362)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no265_m22.b1 PHD_FILE: MSMg01no265_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:25 2005CHROMAT_FILE: MSMg01no265_m22.g1 PHD_FILE: MSMg01no265_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGT
AGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAAT
CAGGGACTAGACAAGGCTGCCCATTTTCTCCCTACCTTTTCAACATAGTA
CTTGAAATATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGAT
ACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGA
TAGTATATATAAGTGACCCTAAAAATTCAATCAGAGAACTCCTAAACCTG
ATAAACAGCTTCTTTTATGTAGCTGCACCCCACATTAACTCAAACAAGTC
AATGGCCTTTCTCTACACCAAGAATAAACAGGCTGAGAAAGAAATTAGGG
AAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCAGCGTG
ACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCT
GAAGAAAGAAATTAAAGAAGATCTCAGAATTTGGAAAGATCTCCCATGCT
CATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCA
ATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAA
TGAATTGGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAACCTAG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGCTCAATTAAAGAGAAAAAA
AAAAAGAAAAGAAAAGAAAAGAAATCATCGAATTATAGAGCTTGCTAAGA
GAATAGCACCGCAAAAGACCTATAGAATCTGTGAACAAGCATGAACCTGA
AAAGAAAGTAAAACATGATGACCATAACTGAAGCAAATAAAGCCGAAAGG
GCAGTGCTGTTGGGAACACTCACTCCTGCCCAAAGCCCCATCTTCCTCCT
GTTCCTCCTGTACTCACCCCAAACAAAGAACAAAATCATCCCAGTCAATA
TTTCAAAATAAAGCTTGTCTTTTCCACCCCACCACCCATTGTTTCCAAGT
GCTCTATGAACTTTTAATGCAGAACAACACATCCCACCACAGACCTACAT
CTCCACCAAGGACAGGGAGTACACAGAAGTGCACCTCTCCCTGCGGTGGC
CATGGCTGCTGTCACCGGTTAATGCCTATGTTTTTCTGCCACTCTAAGAT
GAGGCTTCAGATTCCCTGTCAACATTGCATTCCGGGCAGAACCCGTTACT
AACCAAAGCTGACATGTGAAAGGAAATCAATTTTTCATACCTGTTACAGA
TGTTGCGTTCCCCTTGATGCATTCTGAAATGAACACAGCTATTTTGGCAA
TCATATAAATCTATTAACTCATAAAACTTCTCTTTCTACTAGAAACCTTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_m22.g1 MSMg01no265_m22.g1 CHROMAT_FILE:
MSMg01no265_m22.g1 PHD_FILE: MSMg01no265_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:25 2005
         (289 letters)



>mm_chr5_70104056_70104743
          Length = 688

 Score =  416 bits (215), Expect = e-121
 Identities = 263/289 (91%), Gaps = 18/289 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggctcaattaaagagaaaaaaaaaaagaaaagaaaagaaaagaaatcatcgaattat 60
           |||||||| ||| |||||||||        ||||||||||||||||||||||||||||||
Sbjct: 465 tctggctccattcaagagaaaa--------aaaagaaaagaaaagaaatcatcgaattat 414

                                                                       
Query: 61  agagcttgctaagagaatagcaccgcaaaagacctatagaatctgtgaacaagcatgaac 120
           | |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 413 aaagcttgctaagagaatagcaccgc-aaagaactatagaatctgtgaacaagcatgaac 355

                                                                       
Query: 121 ctgaaaagaaagtaaaacatgatgaccataactgaagcaaataaagccgaaagggcagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctgaaaagaaagtaaaacatgatgaccataactgaagcaaataaagccgaaagggcagtg 295

                                                                       
Query: 181 ctgttgggaacactcactcctgcccaaagccccatcttcctcctgttcctcctgtactca 240
           ||||||||||||||||| |||| |||||||||||||||||||||||         |||||
Sbjct: 294 ctgttgggaacactcacccctgtccaaagccccatcttcctcctgt---------actca 244

                                                            
Query: 241 ccccaaacaaagaacaaaatcatcccagtcaatatttcaaaataaagct 289
           ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 243 ccccaaacaaagaacaacatcatcccagtcaatatttccaaataaagct 195


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space:   190120
Effective search space used:   190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)