BAC Information

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BAC

Clone NameMSMg01-266D16
Chromosome5 (Build37)
Map Location 126,162,055 - 126,162,335
singlet/doubletsinglet
Overlap geneTmem132b
Upstream geneAtp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs
Downstream geneEG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266D16.T7 (MSMg01no266_d16.b1)MSMg01-266D16.TJ (MSMg01no266_d16.g1)
ACCAG407275AG407276
length728751
length of high quality
(start - end)
287 (75 - 361)295 (74 - 368)
definitionCHROMAT_FILE: MSMg01no266_d16.b1 PHD_FILE: MSMg01no266_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:58 2005CHROMAT_FILE: MSMg01no266_d16.g1 PHD_FILE: MSMg01no266_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGTAGCTTTCCGGAGAGACAAGAAGGCACTTTTAGGCAGGTGAT
ACCATGGAACACTTTGCGTCATACACCTGAGGGGTCCTAGTACCTCTGTT
AATGTCATCTGCTGTTATGGCCTGAATCTTAGTTTTTGAGATAACATCTT
CCCATGTAGCCCTGGCTGGCCTAGAGCTCTCTGCACAGACCAGACTGCTC
TCAAACTCACAGAGATCCTCCTGCCTCTATTCCTCTTTTATCTAGTAATG
CCCTCTTTCTTCTTTCACACCTCCTTCTCCCTTGTAGATCACATGTGTGA
GAGGTGTGTGTATTTTTCTTTCCCCCCCCGCCCTTCTCTGGTTTTCCACA
AGGATAATCCACCTATACCCCTCCCACCCAACAAACTTGCAAACAAGGTT
CTTAGAATGTCACCTGAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCAC
CGACTGCTCTTCTGAAGGTCCTGAGTTCAAATTCCAGCAACCACATGGTG
GCTCACAACCATCCGTAATGAGATCTGATGCCATCTTCTGATGCATGCGA
AGACAGCTACAGTGTACTTAGATATAATAATACATAAATCTTTAACAAAA
AAAAGAATGTCACCTGAGTTGGCAAGACTTCTCCTGGAGGGGGGCATATC
TGGTTCTCCTTTACGTAAGTTCTTTTCC
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTCTAGTCTGGACCTTTGAAGGAAG
AAGACACATGCCTTTGATCCATATCTCAAGCCGGAAAGACATGGCTTTAA
TCTGGGCCATACACTGTCCTGGAAGTGTATATAAAGACATAGAAGAAGGA
AGCTTTTGCTCTCTGCCTACTTGCCCTCACCTTGTTAGCACATCCATTCC
TTCACTGGCAGTAGAATCTACCAACTTCTTCAGGACTCCAGCATATACTG
AAGACCAGCTGAGACATCCAGCCTTTGTGAACTGAGCAACTACTCTATTC
TTGGACTTCCTCTTCATAGGCAGCCATTGCTGGATTAGCTGGACTGCAGC
TTGTAAATCATTCCACTACATTATATATGTGCATACATACATAAGAGAGA
GAGGAAAGAGAGAGAGAGAGAGAGTCATTCTATAAGTTCTGTTACTCTTG
AAATTTTGGTTGAACACTGTGGCTCTTGGCTCTTTATGTCACTGCTCAGG
GAATCAGTTCATGTTTGTGTGACAGTCATTTAACTGAGCCATCATCTCTC
CAGCTCTCATTCTGCTCCTTAGCTTTGACATTTCTTTAACCTGACAATTG
TGTGTGTGTGGAATGTCTAGACTATTACCTGGTGTGATGGCTATTCTTGG
TTGCCAACTTGACTGCATCTGGAATGATCTGAAATCAAGTGGTTGGGTAC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_d16.b1 MSMg01no266_d16.b1 CHROMAT_FILE:
MSMg01no266_d16.b1 PHD_FILE: MSMg01no266_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:58 2005
         (287 letters)



>mm_chr5_126161855_126162541
          Length = 687

 Score =  511 bits (264), Expect = e-149
 Identities = 278/284 (97%), Gaps = 3/284 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagaaggcacttttaggcaggtgataccatggaacactttgcgtcatacacctgagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 caagaaggcacttttaggcaggtgataccatggaacactttgcgtcatacagctgagggg 260

                                                                       
Query: 61  tcctagtacctctgttaatgtcatctgctgttatggcctgaatcttagtttttgagataa 120
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 tcctattacctctgttaatgtcatctgctgttatggcccgaatcttagtttttgagataa 320

                                                                       
Query: 121 catcttcccatgtagccctggctggcctagagctctctgcacagaccagactgctctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcttcccatgtagccctggctggcctagagctctctgcacagaccagactgctctcaa 380

                                                                       
Query: 181 actcacagagatcctcctgcctctattcctcttttatctagtaatgccctctttcttctt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 381 actcacagagatcctcctgcctctattcctcttttatctagtaatgccctctttctt--- 437

                                                       
Query: 241 tcacacctccttctcccttgtagatcacatgtgtgagaggtgtg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcacacctccttctcccttgtagatcacatgtgtgagaggtgtg 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)