BAC Information

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BAC

Clone NameMSMg01-267B12
Chromosome5 (Build37)
Map Location 61,189,213 - 61,189,542
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546866, Cbfa2t2-ps1, LOC100041498
Downstream geneLOC666597, EG666610, LOC100041524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267B12.T7 (MSMg01no267_b12.b1)MSMg01-267B12.TJ (MSMg01no267_b12.g1)
ACCAG407909AG407910
length728715
length of high quality
(start - end)
276 (46 - 321)331 (385 - 715)
definitionCHROMAT_FILE: MSMg01no267_b12.b1 PHD_FILE: MSMg01no267_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:03 2005CHROMAT_FILE: MSMg01no267_b12.g1 PHD_FILE: MSMg01no267_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAAT
CCACCTCATACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGTATGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTATCTTTTTTTCCAGCAANACCTCTCCTGGGCA
TATATCCAGATTTTGTCCTTCTGGNACGAAGGACACATGNTNNANTATGN
NNANAGNAGNCNNANNNANNAAAGNCNNGAGNNGGAAAGAGGCCGGGGGG
CCCGCAACAGAGGAAGGGANACAGAAAAGGNGGCACANCNACACAAGGGA
GNACNACNCAGCNANCAAAAAGAAGGAACCCACGAAACCCCCAGCCAAAC
GGACGGACCCGGAGGGCACCACCCGGAGCGAGGNAACACACCCACAAAGG
AACCCACACAANANGNACCCACGGANAAGNGGACANCAGCCCAAAACCCA
GGACACCCCAGAGAGAAGACACAACCCCCCAAACACACGAAACCCAAGAA
CAAAGAAGACCGAAGCGGGGACACAACG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCGAAAAATATCTGTTAATATGGAGAGTGAGTCCAAG
GACTGTCAGGATTATGCCAACATTTTACAGTTTTTTTTTCTATTAATTAT
TTTCTTACTTTACATCCCACTGTTAAGGATCCTATCTACCACTTTGTAGT
GCACATGTTTACAGTTCCCTGTTATGTCTTACCTCAGTGCATGTTAGGGA
CATGTTGACTTCCTAACAAATAGAAGTCAATTAAACTAAAGTCACTTCTC
AGTGTGTAGCTTTGAACCTTTTTATGAGTTGCAATCATGAAATCACAAAC
TGTTTTTTTTTCTTATTCCTTACCACCCACCCCTTAAGACTGCCTATAGT
CTACAAATAAGGTAAATTTCACCAAGTAATATGAAGTTATTCTAAACATA
TAATTATTATTGGACTAACTAACTTTAAATCATTGGAAATATTATCAGGT
AGAAAGTATGTGTTCAGGATATGTTTTTTAACAATGTACAAGCTCTGAAG
GAATCACATGAATTTGATATAAAATTATTTGATGGTAGAGTTTACTCTTT
ATAGCTTTCTCATAGCCAAACATTAACATAGTATGCTTAGGCCATAGGCA
AAATGTTATAAGAAAATCAGTTCATATTCTCAAATTATATTAATGTACAA
CTATTATGGTAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_b12.g1 MSMg01no267_b12.g1 CHROMAT_FILE:
MSMg01no267_b12.g1 PHD_FILE: MSMg01no267_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:04 2005
         (331 letters)



>mm_chr5_61189013_61189743
          Length = 731

 Score =  623 bits (322), Expect = 0.0
 Identities = 328/330 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagactgcctatagtctacaaataaggtaaatttcaccaagtaatatgaagttattcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagactgcctatagtctacaaataaggtaaatttcaccaagtaatatgaagttattcta 260

                                                                       
Query: 61  aacatataattattattggactaactaactttaaatcattggaaatattatcaggtagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacatataattattattggactaactaactttaaatcattggaaatattatcaggtagaa 320

                                                                       
Query: 121 agtatgtgttcaggatatgttttttaacaatgtacaagctctgaaggaatcacatgaatt 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtatgtgtccaggatatgttttttaacaatgtacaagctctgaaggaatcacatgaatt 380

                                                                       
Query: 181 tgatataaaattatttgatggtagagtttactctttatagctttctcatagccaaacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatataaaattatttgatggtagagtttactctttatagctttctcatagccaaacatt 440

                                                                       
Query: 241 aacatagtatgcttaggccataggcaaaatgttataagaaaatcagttcatattctcaaa 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aacatagtatgcttaggccataggcaaaatgttacaagaaaatcagttcatattctcaaa 500

                                         
Query: 301 ttatattaatgtacaactattatggtaaac 330
           ||||||||||||||||||||||||||||||
Sbjct: 501 ttatattaatgtacaactattatggtaaac 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)