BAC Information

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BAC

Clone NameMSMg01-267C08
Chromosome5 (Build37)
Map Location 140,912,720 - 140,913,020
singlet/doubletsinglet
Overlap geneEif3s9
Upstream gene3110082I17Rik, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8
Downstream geneLOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11, LOC623466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267C08.T7 (MSMg01no267_c08.b1)MSMg01-267C08.TJ (MSMg01no267_c08.g1)
ACCAG407947AG407948
length728710
length of high quality
(start - end)
317 (45 - 361)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no267_c08.b1 PHD_FILE: MSMg01no267_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:07 2005CHROMAT_FILE: MSMg01no267_c08.g1 PHD_FILE: MSMg01no267_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAGAGATCCGCCTGCCTCTGCCTCCCAAGGGCTGGGATTAAAGGC
GAGCGCCACCACTGCCCAGCAGCATAGAGAAAGGTTGATGTACTTTACAG
AGCTAACTTGGCTCCTTTACTGGCATAGTCATGTTAGCTCCAGCCTTTGC
TGGTAAAGCGCCTGTGCCTGTCATTGGCTTTCACTTTGTTTCACTATAGA
AGACGATCACAGCTAAGTTGTTAAGGCCTTAAGTCGGCTAGGGAAAGACA
GCGTGGTGGCACCTGCCTGTGATCTTAGCTTGCAGGAGGCAGGGCTGGAA
GAGTCCCAAGTTCNATTCNGTCCATGGGCTTGTTCCTAGCACGGTATCCC
AAGNAGATTAAAGCAGCTGCTTCTGAAATCTAATGAAATGGCTTTGCTTT
GCTGTCTGCTGGTCTGTGCTCTGCTAGTGCATTAGGAGTGCTGCTCTCCA
GCTTAGTGGAGGTCTTTGGAAGTGGGGCTGGGGTATGGAGCAGTATAGCA
TCTGACTTCTCCTTCCTGTTGATTGTAGAAACCATCATAGCCTTTGCCTG
GGAACCCAATGGCAGTAAGTTTGCCGTGCTTCATGGTGAGGCCCCTCGGA
TCTCTGTCTCCTTCTACCACGTGAAGAGCAACGGGAAGATTGAACTCATC
AGTAAGTATCCCGCCCTGGGTCTTCCGG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGTGTAGAGGACAGTCATCTATA
TCAGGTATCTTTCTCTATTCCTCACCCCCTTATTTTTTGAGGCAGGGTCT
CTCACTAAACCTAGAGCTTACCGGTTGGGCTGCAGCGGCTGATCTGTGAG
CTCCAGGGACCCACCTGTATGCCCTCCCCAGCCTCAGGATTGCAGGTGAG
TCGCATGCCATGGGACCTGGCTAGGGGTCCGGGTTAAAGCTCTTATGCTT
TCACAGCAGGTACTTTGTCCATGCCTACTCATTCGCTCCTATTAACTTAA
CTCAGATATCATTTCTTCAGATGCCCCCTACCCCCGCCTAAAATTCGAAG
CAATCCTTTTGCCTCAGATTTCCCGAGAGAAGAAAAAACCTCATCATGGG
TATGAACGCACTGTTCTTGGCTTAATGTGGTGAATTAAAAAGAAAAATTG
TTGTTTTTAGATCTCTTTACTTGTATACATGTATGTGCATGCCATGTATG
TATGTGGAGATCAGAGGACAACTTGCAGGAGTTGGCTTTTCCTCCCGCCA
TGGTGGTCCCAGCGATCAAACGCAGGTCTTTAAGCTTGGCAGCAAGCACT
TTAACCTGTTGAATCATCTTGTTGACCCATCATAGGGACTAGACACTTGT
GGCAGGCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_c08.b1 MSMg01no267_c08.b1 CHROMAT_FILE:
MSMg01no267_c08.b1 PHD_FILE: MSMg01no267_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:07 2005
         (317 letters)



>mm_chr5_140912517_140913233
          Length = 717

 Score =  538 bits (278), Expect = e-157
 Identities = 299/314 (95%), Gaps = 13/314 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatagagatccgcctgcctctgcctcccaagggctgggattaaaggcgagcgcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatagagatccgcctgcctctgcctcccaagggctgggattaaaggcgagcgcc 263

                                                                       
Query: 64  accactgcccagcagcatagagaaaggttgatgtactttacagagctaacttggctcctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accactgcccagcagcatagagaaaggttgatgtactttacagagctaacttggctcctt 323

                                                                       
Query: 124 tactggcatagtcatgttagctccagcctttgctggtaaagcgcctgtgcctgtcattgg 183
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tactggcatagtcgtgttagctccagcctttgctggtaaagcgcctgtgcctgtcattgg 383

                                                                       
Query: 184 ctttcactttgtttcactatagaagacgatcacagctaagttgttaaggccttaagtcgg 243
           ||||||||||||||||||||||||||||||||||||||||||||             |||
Sbjct: 384 ctttcactttgtttcactatagaagacgatcacagctaagttgt-------------cgg 430

                                                                       
Query: 244 ctagggaaagacagcgtggtggcacctgcctgtgatcttagcttgcaggaggcagggctg 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttagggaaagacagcgtggtggcacctgcctgtgatcttagcttgcaggaggcagggctg 490

                         
Query: 304 gaagagtcccaagt 317
           ||||||||||||||
Sbjct: 491 gaagagtcccaagt 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)