Query= MSMg01no267_c17.b1 MSMg01no267_c17.b1 CHROMAT_FILE:
MSMg01no267_c17.b1 PHD_FILE: MSMg01no267_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:09 2005
(334 letters)
>mm_chr5_26960453_26961186
Length = 734
Score = 623 bits (322), Expect = 0.0
Identities = 328/330 (99%)
Strand = Plus / Minus
Query: 5 gaattcaggataaacatatctgctgaagtatcgcttcaggaccacatgtcacggaggctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gaattcaggataaacatatctgctgaagtatcgcttcaggaccacatgtcacggaggctg 475
Query: 65 ctgaagagttgtccccccactccagcttcctcagccctgtgccttgacaatcaaaggtca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctgaagagttgtccccccactccagcttcctcagccctgtgccttgacaatcaaaggtca 415
Query: 125 aggctggctgacacccaaggcactatattttttctgaggagcatttaaatcttttgtttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aggctggctgacacccaaggcactatattttttctgaggagcatttaaatcttttgtttt 355
Query: 185 agaggtagataaaacaatattggcacatgaaatagaccacaagttaactaaatagactcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agaggtagataaaacaatattggcacatgaaatagaccacaagttaactaaatagactcc 295
Query: 245 actatttgttatgaaaccttaatggaagattgctgccccagaacattttcatgcaaacac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actatttgttatgaaaccttaatggaagattgctgccccagaacattttcatgcaaacac 235
Query: 305 agtgttttcggtctttgttctcatgacctt 334
||||||||||||||||| |||||||||||
Sbjct: 234 agtgttttcggtctttggcctcatgacctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space: 235625
Effective search space used: 235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no267_c17.g1 MSMg01no267_c17.g1 CHROMAT_FILE:
MSMg01no267_c17.g1 PHD_FILE: MSMg01no267_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:09 2005
(638 letters)
>mm_chr5_26804193_26805227
Length = 1035
Score = 1050 bits (543), Expect = 0.0
Identities = 615/649 (94%), Gaps = 18/649 (2%)
Strand = Plus / Plus
Query: 1 catacatatcaagagttttactcctgacatggaccatctaaccacatgatttgcctagaa 60
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 194 catacatattaagagttttattcctgacatggaccatctaaccacatgatttgcctagaa 253
Query: 61 aatgaaaaactatttaatatgcaaaaagcattgttaagtgcattagaagcgtgggaaaat 120
|||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 254 aatgaaaaacta----atatgcaaaaagcattgttcagtgcattagaagcatgggaaaat 309
Query: 121 agttgaatgtcatatctaaatctactttccttcagtcattgaataagaaatttaaaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agttgaatgtcatatctaaatctactttccttcagtcattgaataagaaatttaaaaaca 369
Query: 181 tacctacaggaataattcctagccttctggagtctggaagtctcatgtacctgtacaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tacctacaggaataattcctagccttctggagtctggaagtctcatgtacctgtacaaat 429
Query: 241 ctgaaactaa-----------agacaaggattctgctgatccagtaagaagctaggtgta 289
||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctgaaacaaacaaacaaaaaaagacaaggattctgctgatccagtaagaagctaggtgta 489
Query: 290 cttgtagtcttttctcctgtgttgcctttcttccagatgaaggcatcatagtagagatgg 349
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 490 cttgtagtcttttctcctgtgttgccttccttccagatgaaggcatcatagtagagatgg 549
Query: 350 atattaatatgagagatgggactttggaaaatatgtaggtggcatggggattgtagaaga 409
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 550 ctattaatatgagagatgggactttggaaaatatgtaggtggcatgggtattgtagaaga 609
Query: 410 gaatagcacatcatatactgggttggcagctaatattaaggctcaagctctctttgtcac 469
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 610 gaatagcacatcatatactgggttggcagctaatataaaggctcaagttctctttgtcac 669
Query: 470 catagaaccagaatgttcaacatgatgttgtactatctgtgatagtgactccttgaggca 529
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 670 catagaaccagaatgttcaacatgatgt---actatctgtgatagtgactccttgaggca 726
Query: 530 acagagatccagggatagagctaggattgttaaataaaataggcatatgttatggtttgt 589
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 acagagatctagggacggagctaggattgttaaataaaataggcatatgttatggtttgc 786
Query: 590 atatgcttggcccagagagtggtactattagtggctgtggccttgttgg 638
|||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 787 atatgcttggcccagagagtggcactattagtggctgtgaccttgttgg 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1035
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1025
Effective search space: 643700
Effective search space used: 643700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
