BAC Information

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BAC

Clone NameMSMg01-267F07
Chromosome5 (Build37)
Map Location 83,876,977 - 84,064,357
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267F07.T7 (MSMg01no267_f07.b1)MSMg01-267F07.TJ (MSMg01no267_f07.g1)
ACCAG408081AG408082
length739721
length of high quality
(start - end)		319 (46 - 364)259 (436 - 694)
definitionCHROMAT_FILE: MSMg01no267_f07.b1 PHD_FILE: MSMg01no267_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:22 2005CHROMAT_FILE: MSMg01no267_f07.g1 PHD_FILE: MSMg01no267_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,064,042 - 84,064,357)(83,876,977 - 83,877,234)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAAGCAGATCATCATGAGGTGTGGAGGTGCTAGTGGGAATCTG
AAGCAGAAATGGAACTTTCAGGAAGTTGGGAATGCTAAGAAAACGTTTTA
TCTGCTAAGGAAAGAAATGGGAAGCATACAAAACCAAGCCAAGAAGACTT
TGTAAGATACAAGCAAGAAGGTCACAGGACACAGCTTTTCATCCTATTAT
CACATACTCTAGGTGCTGGACATGGGGACATGATTAGATGTTTACTTCTG
GACCACATTTATTTTATTTCAGTATTCTAAGCCACATCTGAAGTGGGAAT
GTTTGCTCTGATATACTANTCTGCGCCCCCCCCCCCGTAAATTCATTTTC
AAGGTGATTTTTGATGGCTTTTATTTTTTTCAAAGACTTACACTTAATTG
TTTTCTTGTGCATCAAAACAAACAAACAAACAAACACACAAACAAACAAA
CAAACAAACCCAGAAACCTGCATGTGGACTTGTGAAACATTGTAAGACAG
TTAAGTTAAATTATTAGTTTCTTGGGGATAGAGTAAGTAAATGTCTGCTT
GTCTCGAAATGAAGTTTAGCCTTTGTGAGCAAGTGGTAGATTGTTAGAGT
GTGGATTTTTAGTTCTTCCCCGAGATTCCTGTGCTGAAATGTGGCCCCCC
TCCCACGGTATAACTGCTAGGGATGTAATTCCTTGCATN

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATGCCTGTATACAGGAATAAAA
CCTAAATTATCTGTAGGTTAATAACTTAAAATATCAAGTAGAAGATCTAT
GGATCTTTATTTGTTAAAAGATTTATATTACATAGTGGATATACTTCTGT
ATATGACATGAATGCATTGCCTGTGAAGAAGAACAGGGTGTCAGATCCCC
AGTAATTATAGTTATGTATGGCTGTGAGTCACTATGTGAGTGTTGTAAAT
CAAACCTGGATCCTCTGAAACAGCTACACGTGTTCTAAACCACTGAGCCA
TCTTGCCATTTTNCTGNATTCACCTTTCTACCCCAAACTTTGTTCAGTTA
AATATGATAAATTTACTGCACACAAATAAAAACATACACTTTTCTTTGTA
ATTCCAATACTTTAACTCATCCATCAACACAAACCCACCTTAATAACCTA
ACTAGTTTGTTTCATTTATTAGAGGTTTTTTTTTCTAGTCAGTAAAACTT
TTGTAAGGTCATAGTGGCATTATGAAGACAAGAAATATGATTTGAGAACC
ATATTCCAGCTGTAGAAACCCAGCATATTAGTATTATAATCTAGTGCTTA
TTATGAATCCATGCAAGCTTTATTTCCCATGCTGACATTATTTNGAAATT
AAAATTAAGTAACAAGACTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_f07.b1 MSMg01no267_f07.b1 CHROMAT_FILE:
MSMg01no267_f07.b1 PHD_FILE: MSMg01no267_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:22 2005
         (319 letters)



>mm_chr5_84063839_84064557
          Length = 719

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcaagcagatcatcatgaggtgtggaggtgctagtgggaatctgaagcagaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggaattcttcaagcagatcatcatgaggtgtggaggtgctagtgggaatctgaagcagaa 460

                                                                       
Query: 64  atggaactttcaggaagttgggaatgctaagaaaacgttttatctgctaaggaaagaaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 459 atggaactttcaggaagttgggaatgctaagaaaacgttttatctgctaaggaaaaaaat 400

                                                                       
Query: 124 gggaagcatacaaaaccaagccaagaagactttgtaagatacaagcaagaaggtcacagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gggaagcatacaaaaccaagccaagaagactttgtaagatacaagcaagaaggtcacagg 340

                                                                       
Query: 184 acacagcttttcatcctattatcacatactctaggtgctggacatggggacatgattaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 acacagcttttcatcctattatcacatactctaggtgctggacatggggacatgattaga 280

                                                                       
Query: 244 tgtttacttctggaccacatttattttatttcagtattctaagccacatctgaagtggga 303
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgtttacttctggaccacatttaatttatttcagtattctaagccacatctgaagtggga 220

                           
Query: 304 atgtttgctctgatat 319
           ||||||||||||||||
Sbjct: 219 atgtttgctctgatat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no267_f07.g1 MSMg01no267_f07.g1 CHROMAT_FILE:
MSMg01no267_f07.g1 PHD_FILE: MSMg01no267_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:22 2005
         (259 letters)



>mm_chr5_83876777_83877435
          Length = 659

 Score =  476 bits (246), Expect = e-139
 Identities = 255/258 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacttttctttgtaattccaatactttaactcatccatcaacacaaacccaccttaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacttttctttgtaattccaatactttaactcatccatcaacacaaacccaccttaata 260

                                                                       
Query: 61  acctaactagtttgtttcatttattagaggtttttttttctagtcagtaaaacttttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctaactagtttgtttcatttattagaggtttttttttctagtcagtaaaacttttgta 320

                                                                       
Query: 121 aggtcatagtggcattatgaagacaagaaatatgatttgagaaccatattccagctgtag 180
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtcatagtgtcattatcaagacaagaaatatgatttgagaaccatattccagctgtag 380

                                                                       
Query: 181 aaacccagcatattagtattataatctagtgcttattatgaatccatgcaagctttattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacccagcatattagtattataatctagtgcttattatgaatccatgcaagctttattt 440

                             
Query: 241 cccatgctgacattattt 258
           |||||| |||||||||||
Sbjct: 441 cccatgttgacattattt 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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