BAC Information

Click to search

BAC

Clone NameMSMg01-267K04
Chromosome5 (Build37)
Map Location 28,778,360 - 28,778,668
singlet/doubletsinglet
Overlap genenone
Upstream geneDpp6, Speer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1, Prr8
Downstream geneShh, LOC100039258, Rnf32, EG664949, Lmbr1, EG620572, Gm1040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267K04.T7 (MSMg01no267_k04.b1)MSMg01-267K04.TJ (MSMg01no267_k04.g1)
ACCAG408298AG408299
length732727
length of high quality
(start - end)
323 (45 - 367)343 (385 - 727)
definitionCHROMAT_FILE: MSMg01no267_k04.b1 PHD_FILE: MSMg01no267_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:45 2005CHROMAT_FILE: MSMg01no267_k04.g1 PHD_FILE: MSMg01no267_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACTTGACTTCTCCACAGGGACTATGAAAGGTAGAAGATCCTGGGC
AGATGTCATACAGAGCCTAAGAGAACACAAATGTCAGCCCAGGCTACTAT
ACCCGGCAAAACTCTCAGTTACTATAGATGGAGAAAGTAAGGTATCCAAT
GACAAAACCAAATTTACACAGTATCTTTCCACAAATTCAGCCCTTCAAAG
GATAATAAAGGGAAAACTCCAACACAAAGAGGGAAACTACATTCTAGAAA
AAGCATGAAAGTAATCTTTCAACAAACCTAAAGAAGATAGCCACATGAAC
AGAATTCCAACTCTTTTTTTTTAATCCCCCCCCCAACAATGACTTTTCCT
TAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAAATATAGA
CTAACAGACTGGTTACATAAACAATACCCAACATTTTGCTGCACACAGGA
AACCCACCTCTGGGACAAAGACATACACTACCTTAACTAAATTCCACTAA
AATCAGGGACTAGAAAAGGCTGCCCACTCTCTCCCTACCTATTCAATATA
GTACCTGAAGTCATAACCAGAGTAATTAGACAACAAAAGGAGGTCAAAAG
AATACAAAATGGAAAGGAAGAAGTCAAGAAGGCTGGAAAACAATATTCCA
AGCAAATGGTCCCAATAAATAAGCTGGAGTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGCTGCTAGAAAATGACAGGGG
ATTGGGGAGTTCACCAAGGTAGGACCCCCCCTCACTCATGCCTCATGTTT
ATGCGACAGATGGGAGTCATAAACTAGAGAGGATATGTATAGGCGTGAGT
ACCAGACTCAGGGCCAATCTGGCAGCTACCTTTTTCACTTCTGGCCAAAA
GCGAGCTGGAGTTGCCCAGCATCCCCCCAGAGCTGCCTTTGTGTTGCCTA
TCTCTGCAAGTGTTGATGGTGCTATTAGGGCTAATAGCAGCTGACCACGG
ACTTTGACCTGGTATATTTGGAGGTTCCTACAAGTCACAAATGGAGGATA
CCTGGGGTTGACCTCTATATACACATGCACACACATACACCATGAACACA
AAACCAAACACATACAGAATCATATTACACACACACACACACACACACAC
ACACACACACACACACACACACACACACAAATTGGCTTGCAGGGCACGAG
ACAGAGACTGGACTTTCAGGGGCCCACTATTGTCAGAAATGGGACTATCT
TTCACTAGAATTCACAGGGCTGAATGCAATGCCCTCCTGCCCAAGAGCCA
AAGAGGGCCTCAGAGGATATTTGGTGCATAGCAGGGACAGTCCTGTGTGT
ATGTATGTGGACGCCAAATTAAACGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_k04.g1 MSMg01no267_k04.g1 CHROMAT_FILE:
MSMg01no267_k04.g1 PHD_FILE: MSMg01no267_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:45 2005
         (343 letters)



>mm_chr5_28778126_28778868
          Length = 743

 Score =  513 bits (265), Expect = e-150
 Identities = 307/343 (89%), Gaps = 34/343 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacaaatggaggatacctggggttgacctctatatacacatgcacacacatacaccatg 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tcacagatggaggatacctggggttgacctctatatacacatgcacacacatacaccatg 294

                                                                       
Query: 61  aacacaaaaccaaacacatacagaatcatattacacacacacacacacacacacacacac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 295 aacacaaaaccaaacacatacagaatcatattacacacacacacacacaca--------- 345

                                                                       
Query: 121 acacacacacacacacacacacacaaattggcttgcagggcacgagacagagactggact 180
                                    |||||||||||||||||||||||||||||||||||
Sbjct: 346 -------------------------aattggcttgcagggcacgagacagagactggact 380

                                                                       
Query: 181 ttcaggggcccactattgtcagaaatgggactatctttcactagaattcacagggctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaggggcccactattgtcagaaatgggactatctttcactagaattcacagggctgaa 440

                                                                       
Query: 241 tgcaatgccctcctgcccaagagccaaagagggcctcagaggatatttggtgcatagcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcaatgccctcctgcccaagagccaaagagggcctcagaggatatttggtgcatagcag 500

                                                      
Query: 301 ggacagtcctgtgtgtatgtatgtggacgccaaattaaacgct 343
           ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ggacagtcctgtgtgtatgtatgtggatgccaaattaaacgct 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)