Query= MSMg01no267_o10.b1 MSMg01no267_o10.b1 CHROMAT_FILE:
MSMg01no267_o10.b1 PHD_FILE: MSMg01no267_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:04 2005
(299 letters)
>mm_chr5_57752077_57752775
Length = 699
Score = 540 bits (279), Expect = e-158
Identities = 296/305 (97%), Gaps = 6/305 (1%)
Strand = Plus / Minus
Query: 1 ttctcctgaaaagctttgtatgtcaggggcaggaagtaacaaaattaatccactatttta 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 436 ttctcctgaaaagctttgtatgtcaagggcaggaagtaacaaaattaatccactatttta 377
Query: 61 tcaccataatttttacattcaaatttagtcatccctaccaactaaaatgtttgtatactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcaccataatttttacattcaaatttagtcatccctaccaactaaaatgtttgtatactg 317
Query: 121 ccatttattttcagaagtagggtttctattagtctcacagacagttcaataacaagaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ccatttattttcagaagtagggtttctattagtctcacagacagttcaataacaagaact 257
Query: 181 agaccagaaagcttgcagcaatcatctctttcagagcttgaagaaatctaaaaata---- 236
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 256 agaccagaaagcttgcagcaatcatctctttcagagcttgaaggaatctaaaaatacaaa 197
Query: 237 --aaaataaggcaaaattcatgatgtccttgcttttttgatacctgagtagtattccatt 294
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 196 gaaaaataaggcaaaattcatgatgtccttgcttttttgacacctgagtagtattccatt 137
Query: 295 gtgta 299
|||||
Sbjct: 136 gtgta 132
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no267_o10.g1 MSMg01no267_o10.g1 CHROMAT_FILE:
MSMg01no267_o10.g1 PHD_FILE: MSMg01no267_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:04 2005
(346 letters)
>mm_chr5_57646312_57647056
Length = 745
Score = 642 bits (332), Expect = 0.0
Identities = 344/350 (98%), Gaps = 4/350 (1%)
Strand = Plus / Plus
Query: 1 ttttgttgaaaatcattacttttatgacaggattggtttttactaaaataaacaaataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgttgaaaatcattacttttatgacaggattggtttttactaaaataaacaaataat 260
Query: 61 tgaagaaattgacaatcacatccatactcaataagttaatccatatgatcctatgctaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagaaattgacaatcacatccatactcaataagttaatccatatgatcctatgctaaa 320
Query: 121 aactaaatgaacagatacagatagctgatgtcatcccgctgtccttttgcaaaacgaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactaaatgaacagatacagatagctgatgtcatcccgctgtccttttgcaaaacgaaat 380
Query: 181 gtgtccagaaaatgacctttttatggatgccattatgttactccccaattgatgtacaat 240
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gtgtctagaaaatgacctttttatggatgccattatgttactccccaattggtgtacaat 440
Query: 241 attaggggaataaatcaatcattacagttaattcaagtggaaactgtgtcagtctttcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaggggaataaatcaatcattacagttaattcaagtggaaactgtgtcagtctttcaa 500
Query: 301 aaccttatgaggaaaagtttggaaggatagtttgt----cttgtataaat 346
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 aaccttatgaggaaaagtttggaaggatagtttgtttgtcttgtataaat 550
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 745
Length adjustment: 9
Effective length of query: 337
Effective length of database: 736
Effective search space: 248032
Effective search space used: 248032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
