BAC Information

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BAC

Clone NameMSMg01-268B13
Chromosome5 (Build37)
Map Location 81,964,859 - 82,115,899
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268B13.T7 (MSMg01no268_b13.b1)MSMg01-268B13.TJ (MSMg01no268_b13.g1)
ACCAG408632AG408633
length734730
length of high quality
(start - end)		315 (46 - 360)298 (433 - 730)
definitionCHROMAT_FILE: MSMg01no268_b13.b1 PHD_FILE: MSMg01no268_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:19 2005CHROMAT_FILE: MSMg01no268_b13.g1 PHD_FILE: MSMg01no268_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,115,589 - 82,115,899)(81,964,859 - 81,965,155)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCAGCAATGCTCAGAGAAGTTCCTCAAAGAATTGAAATTATCCC
TTGTCTTGAAAATGGTGTAGCCATTTTTAGCTGTTAATGACTTCAAGGGT
CACAAAATAATCTGGCATTGAAGGTTTTAATCTTACCTTAAGGAATGGGT
ACTGAGAATACTATAGTATTTCTATACTGTCCTTTGTTGGTTTTAGTTCA
TTTAAAAGTTGCTAAATGATAAAAACAGAAAAACAAACAGAATGGCCATC
TTTAACAGCACATCCCAGCAATTCTATAAATAGCACATTTCAAAATTCAA
TGATTAAGCATATATTGTGTATACACCGCACCCCACGCAGATCAGTAATC
CAAACCCCCGACAATGAAAGCTCACCAACAGATGAATTCACTAGCGAATT
CAACCAGACATTTAAAGAATTAATAGCAATTCTTCCCGAGCTGTTCCAAA
AGGTTCAAGAGGAGGGAATGCTTCCAAATCCATTTTATGAGTGAGAATTT
CTATTCTGATACAAAAGCCTGACACAAGCTGCACAGACTATAAAACTACC
AGTCATATCCCTGATGAATGTGGATGCATAATTCTTCAACAAAAGGCCAG
CAAACCAAACTCAATAGCACATTAAAAGAACCATCTATTATAACCAAATG
TAATTTATTTCTGAGATGAAAAGATAGTTCAACA

ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGTGCCTCATAAGGTAGGGGCC
AAAGTTGCACAGACACGATCTTGCCCGGTCCTGATGTATTAACCTTGAGG
GAGCCAGGTGTCTATTGTTACTGAGAGTCTTAAACATCCCCCAGAATTTA
GTTGGCAACACTCAGATGCATTTCTTTCTTTCTTCCATTAACAAATCTGT
TTACCAGTCAGGGATTAAAAAAAAATTATTGTTCCTCAGATACTAGCCAG
GAGGTCACATTGCCCTCACAAGGGGAGGGCACAGTAGATGAGTTATTACA
GCTCGTTGTCCTTTTTTCTTCCTCCTCTTTACGAGGTTACCTTTGTGGTG
TCCTTTACTAAGGTATTCAAAAGGCAGAGGAATTTTTTGCTTGTAATACT
TCCTGAAAAGACCAAATTGGTTGGTTTTTAAGCCAATTAATCTAAGAAGA
GAACACCTGTCTCTCCTTAAATAATGAGCCCGATGTTTTCCCATGAATAC
ATTTTGGGAAATAATGCTGATCAGTGGAGCCATAATTCATTTCTAGTCAT
CTATTTCTTCCAATTTGAAACAAATAAAAGCTTCCTGGTCGCGAGGCTCC
TGGGAAGAAAAAACAAGCTGATTGTTCTCTTGCCTGTGGAGATATTCTCC
GTGAAGAGGAGCTCAGATGTACTTGGCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_b13.b1 MSMg01no268_b13.b1 CHROMAT_FILE:
MSMg01no268_b13.b1 PHD_FILE: MSMg01no268_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:19 2005
         (315 letters)



>mm_chr5_82115385_82116099
          Length = 715

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcagcaatgctcagagaagttcctcaaagaattgaaattatcccttgtcttga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcatcagcaatgctcagagaagttcctcaaagaattgaaattatcccttgtcttga 456

                                                                       
Query: 65  aaatggtgtagccatttttagctgttaatgacttcaagggtcacaaaataatctggcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaatggtgtagccatttttagctgttaatgacttcaagggtcacaaaataatctggcatt 396

                                                                       
Query: 125 gaaggttttaatcttaccttaaggaatgggtactgagaatactatagtatttctatactg 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gaagtttttaatcttaccttaaggaatgggtactgagaatactatagtatttctatactg 336

                                                                       
Query: 185 tcctttgttggttttagttcatttaaaagttgctaaatgataaaaacagaaaaacaaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tcctttgttggttttagttcatttaaaagttgctaaatgataaaaacagaaaaacaaaca 276

                                                                       
Query: 245 gaatggccatctttaacagcacatcccagcaattctataaatagcacatttcaaaattca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaatggccatctttaacagcacatcccagcaattctataaatagcacatttcaaaattca 216

                      
Query: 305 atgattaagca 315
           |||||||||||
Sbjct: 215 atgattaagca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no268_b13.g1 MSMg01no268_b13.g1 CHROMAT_FILE:
MSMg01no268_b13.g1 PHD_FILE: MSMg01no268_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:19 2005
         (298 letters)



>mm_chr5_81964659_81965356
          Length = 698

 Score =  567 bits (293), Expect = e-166
 Identities = 296/297 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttttgcttgtaatacttcctgaaaagaccaaattggttggtttttaagccaattaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttttgcttgtaatacttcctgaaaagaccaaattggttggtttttaagccaattaatc 260

                                                                       
Query: 61  taagaagagaacacctgtctctccttaaataatgagcccgatgttttcccatgaatacat 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 taagaagagaacacctgtctctccttaaataatgagtccgatgttttcccatgaatacat 320

                                                                       
Query: 121 tttgggaaataatgctgatcagtggagccataattcatttctagtcatctatttcttcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgggaaataatgctgatcagtggagccataattcatttctagtcatctatttcttcca 380

                                                                       
Query: 181 atttgaaacaaataaaagcttcctggtcgcgaggctcctgggaagaaaaaacaagctgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgaaacaaataaaagcttcctggtcgcgaggctcctgggaagaaaaaacaagctgat 440

                                                                    
Query: 241 tgttctcttgcctgtggagatattctccgtgaagaggagctcagatgtacttggcag 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttctcttgcctgtggagatattctccgtgaagaggagctcagatgtacttggcag 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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